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Commit 665b5df5 authored by Andy Yates's avatar Andy Yates
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Adding a repeat region SO term

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modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
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...@@ -119,6 +119,7 @@ my %feature_so_mapping = ( ...@@ -119,6 +119,7 @@ my %feature_so_mapping = (
'Bio::EnsEMBL::Transcript' => 'SO:0000673', # transcript 'Bio::EnsEMBL::Transcript' => 'SO:0000673', # transcript
'Bio::EnsEMBL::Exon' => 'SO:0000147', 'Bio::EnsEMBL::Exon' => 'SO:0000147',
'Bio::EnsEMBL::Slice' => 'SO:0000001', # region 'Bio::EnsEMBL::Slice' => 'SO:0000001', # region
'Bio::EnsEMBL::RepeatFeature' => 'SO:0000657', # repeat region
'Bio::EnsEMBL::Variation::VariationFeature' => 'SO:0001060', # sequence variant 'Bio::EnsEMBL::Variation::VariationFeature' => 'SO:0001060', # sequence variant
'Bio::EnsEMBL::Variation::StructuralVariationFeature' => 'SO:0001537', # structural variant 'Bio::EnsEMBL::Variation::StructuralVariationFeature' => 'SO:0001537', # structural variant
'Bio::EnsEMBL::Compara::ConstrainedElement' => 'SO:0001009', #DNA_constraint_sequence ???? 'Bio::EnsEMBL::Compara::ConstrainedElement' => 'SO:0001009', #DNA_constraint_sequence ????
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