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ensembl-gh-mirror
ensembl
Commits
69e029da
Commit
69e029da
authored
Mar 30, 2004
by
James Stalker
Browse files
*** empty log message ***
parent
43d4d37d
Changes
3
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3 changed files
with
1 addition
and
4 deletions
+1
-4
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
+0
-2
modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm
+1
-1
modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
+0
-1
No files found.
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
View file @
69e029da
...
...
@@ -175,7 +175,6 @@ sub generic_fetch {
#append additional clauses which may have been defined
$sql
.=
"
\n
$final_clause
";
##print STDERR "\n\n$sql\n\n";
my
$sth
=
$db
->
prepare
(
$sql
);
...
...
@@ -345,7 +344,6 @@ sub fetch_all_by_Slice_and_score {
my
$syn
=
$tabs
[
0
]
->
[
1
];
$constraint
=
"
${syn}
.score >
$score
";
}
return
$self
->
fetch_all_by_Slice_constraint
(
$slice
,
$constraint
,
$logic_name
);
}
...
...
modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm
View file @
69e029da
...
...
@@ -151,7 +151,7 @@ sub _objs_from_sth {
sub
fetch_all_by_chr_name
{
my
(
$self
,
$chr_name
)
=
@_
;
throw
('
Chromosome name argument expected
')
if
(
!
$chr_name
);
my
$slice
=
...
...
modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm
View file @
69e029da
...
...
@@ -704,7 +704,6 @@ sub fetch_by_chr_band {
my
(
$self
,
$chr
,
$band
)
=
@_
;
my
$chr_slice
=
$self
->
fetch_by_region
('
toplevel
',
$chr
);
my
$seq_region_id
=
$self
->
get_seq_region_id
(
$chr_slice
);
my
$sth
=
$self
->
db
->
prepare
...
...
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