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ensembl-gh-mirror
ensembl
Commits
6ad9f7a8
Commit
6ad9f7a8
authored
Nov 22, 2002
by
Graham McVicker
Browse files
removed more deprecated methods
parent
a64aa50e
Changes
6
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6 changed files
with
1 addition
and
140 deletions
+1
-140
modules/Bio/EnsEMBL/DBSQL/ProxyDnaAlignFeatureAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/ProxyDnaAlignFeatureAdaptor.pm
+1
-9
modules/Bio/EnsEMBL/DBSQL/ProxyGeneAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/ProxyGeneAdaptor.pm
+0
-22
modules/Bio/EnsEMBL/DBSQL/ProxyRepeatFeatureAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/ProxyRepeatFeatureAdaptor.pm
+0
-19
modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm
+0
-22
modules/Bio/EnsEMBL/DBSQL/RawContigAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/RawContigAdaptor.pm
+0
-41
modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm
modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm
+0
-27
No files found.
modules/Bio/EnsEMBL/DBSQL/ProxyDnaAlignFeatureAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -154,12 +154,4 @@ sub remove {
return
$self
->
{'
_primary_adaptor
'}
->
remove
(
$feature
);
}
1
;
modules/Bio/EnsEMBL/DBSQL/ProxyGeneAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -74,28 +74,6 @@ sub fetch_all_by_Slice {
=head2 fetch_by_Slice
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_all_by_Slice instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_Slice
{
my
(
$self
,
@args
)
=
@_
;
$self
->
warn
("
fetch_by_Slice has been renamed fetch_all_by_Slice
\n
"
.
caller
);
return
$self
->
fetch_all_by_Slice
(
@args
);
}
=head2 fetch_by_transcript_stable_id
Arg [1] : list of arbitrary args @args
...
...
modules/Bio/EnsEMBL/DBSQL/ProxyRepeatFeatureAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -68,24 +68,5 @@ sub fetch_all_by_Slice {
}
=head2 fetch_by_Slice
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_all_by_Slice instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_Slice
{
my
(
$self
,
@args
)
=
@_
;
$self
->
warn
("
fetch_by_Slice has been renamed fetch_all_by_Slice
\n
"
.
caller
);
return
$self
->
fetch_all_by_Slice
(
@args
);
}
1
;
modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -76,28 +76,6 @@ sub fetch_all_by_Slice {
}
=head2 fetch_by_Slice
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_all_by_Slice instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_Slice
{
my
(
$self
,
@args
)
=
@_
;
$self
->
warn
("
fetch_by_Slice has been renamed fetch_all_by_Slice
\n
"
.
caller
);
return
$self
->
fetch_all_by_Slice
(
@args
);
}
=head2 fetch_by_SNP_id
Arg [1] : list of arbitrary args @args
...
...
modules/Bio/EnsEMBL/DBSQL/RawContigAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -535,47 +535,6 @@ sub deleteObj {
=head2 fetch_by_clone
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_all_by_Clone instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_clone
{
my
(
$self
,
@args
)
=
@_
;
print
STDERR
"
fetch_by_clone has been renamed fetch_all_by_Clone
\n
"
.
caller
;
return
$self
->
fetch_by_Clone
(
@args
);
}
=head2 fetch_by_Clone
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_all_by_Clone instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_Clone
{
my
(
$self
,
@args
)
=
@_
;
$self
->
warn
("
fetch_by_Clone has been renamed fetch_all_by_Clone
\n
"
.
caller
);
return
$self
->
fetch_all_by_Clone
(
@args
);
}
=head2 remove
Arg [1] : Bio::EnsEMBL::RawContig $contig
...
...
modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm
View file @
6ad9f7a8
...
...
@@ -305,31 +305,4 @@ sub _reverse_comp {
}
=head2 fetch_by_Contig_start_end_strand
Arg [1] : none
Example : none
Description: DEPRECATED use fetch_by_RawContig_start_end_strand instead
Returntype : none
Exceptions : none
Caller : none
=cut
sub
fetch_by_Contig_start_end_strand
{
my
(
$self
,
@args
)
=
@_
;
$self
->
warn
("
fetch_by_Contig_start_end_strand has been renamed fetch_by_RawContig_start_end_strand
\n
"
.
caller
);
return
$self
->
fetch_by_RawContig_start_end_strand
(
@args
);
}
1
;
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