Commit 75e14e9c authored by Magali Ruffier's avatar Magali Ruffier
Browse files

add latest patches

parent 76f4ab73
......@@ -94,3 +94,4 @@
40 1 species.taxonomy_id 1217737
31 1 species.url Bacillus_thuringiensis
55 1 transcriptbuild.level toplevel
97 \N patch patch_83_84_e.sql|nullable_versions
......@@ -159,4 +159,4 @@
162032 469283 31222465 31222583 1 1 0 1 1 ENSE00001109601 1 2004-12-06 12:00:00 2004-12-06 12:00:00
162033 965899 10060 10405 1 0 0 1 1 ENSE00001109603 1 2004-12-06 12:00:00 2004-12-06 12:00:00
162034 469290 1 6 1 0 0 1 1 ENSE00000111111 1 2014-12-11 14:00:00 2014-12-11 14:00:00
162035 469290 5 9 1 0 0 1 1 ENSE00000111112 1 2014-12-11 14:00:00 2014-12-11 14:00:00
\ No newline at end of file
162035 469290 5 9 1 0 0 1 1 ENSE00000111112 1 2014-12-11 14:00:00 2014-12-11 14:00:00
......@@ -18,4 +18,4 @@
18273 protein_coding 1282 469283 31166507 31196939 1 97759 ensembl KNOWN MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 (APC-BINDING PROTEIN EB1). [Source:SWISSPROT;Acc:Q15691] 1 21738 ENSG00000101367 1 2004-12-06 12:00:00 2004-12-06 12:00:00
18274 protein_coding 1282 469283 31210077 31225346 1 0 ensembl NOVEL \N 1 21739 ENSG00000167097 1 2004-12-06 12:00:00 2004-12-06 12:00:00
18275 protein_coding 1282 965899 10060 10405 1 0 ensembl NOVEL \N 1 21740 ENSG00000355555 1 2004-12-06 12:00:00 2004-12-06 12:00:00
18276 protein_coding 1282 469290 1 150 1 \N ensembl NOVEL weird 1 21741 ENSG00000111111 1 2014-12-11 14:00:00 2014-12-11 14:00:00
\ No newline at end of file
18276 protein_coding 1282 469290 1 150 1 \N ensembl NOVEL weird 1 21741 ENSG00000111111 1 2014-12-11 14:00:00 2014-12-11 14:00:00
......@@ -73,3 +73,4 @@
133 \N patch patch_83_84_b.sql|xref.version_default
134 \N patch patch_83_84_c.sql|protein_feature_unique
135 \N patch patch_83_84_d.sql|longer_synonym
136 \N patch patch_83_84_e.sql|nullable_versions
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Fri Dec 11 17:18:34 2015
-- Created on Fri May 6 15:44:14 2016
--
BEGIN TRANSACTION;
......@@ -270,7 +270,7 @@ CREATE TABLE exon (
is_current tinyint NOT NULL DEFAULT 1,
is_constitutive tinyint NOT NULL DEFAULT 0,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -328,7 +328,7 @@ CREATE TABLE gene (
is_current tinyint NOT NULL DEFAULT 1,
canonical_transcript_id integer NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -584,7 +584,7 @@ CREATE UNIQUE INDEX c02 ON misc_set (code);
CREATE TABLE object_xref (
object_xref_id integer NOT NULL,
ensembl_id integer NOT NULL DEFAULT 0,
ensembl_object_type enum NOT NULL,
ensembl_object_type enum NOT NULL DEFAULT 'RawContig',
xref_id integer NOT NULL,
linkage_annotation varchar(255),
analysis_id smallint NOT NULL
......@@ -615,7 +615,7 @@ CREATE TABLE operon (
display_label varchar(255),
analysis_id smallint NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -633,7 +633,7 @@ CREATE TABLE operon_transcript (
display_label varchar(255),
analysis_id smallint NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -856,7 +856,7 @@ CREATE TABLE transcript (
is_current tinyint NOT NULL DEFAULT 1,
canonical_translation_id integer,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -907,7 +907,7 @@ CREATE TABLE translation (
seq_end integer NOT NULL,
end_exon_id integer NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -936,7 +936,8 @@ CREATE TABLE unmapped_object (
query_score double precision,
target_score double precision,
ensembl_id integer DEFAULT 0,
ensembl_object_type enum DEFAULT 'RawContig'
ensembl_object_type enum DEFAULT 'RawContig',
parent varchar(255)
);
--
......@@ -953,7 +954,7 @@ CREATE TABLE unmapped_reason (
--
CREATE TABLE xref (
xref_id INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
external_db_id integer NOT NULL DEFAULT 0,
external_db_id integer NOT NULL,
dbprimary_acc varchar(512) NOT NULL,
display_label varchar(512) NOT NULL,
version varchar(10),
......
......@@ -73,3 +73,4 @@
122 \N patch patch_83_84_b.sql|xref.version_default
123 \N patch patch_83_84_c.sql|protein_feature_unique
124 \N patch patch_83_84_d.sql|longer_synonym
125 \N patch patch_83_84_e.sql|nullable_versions
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Fri Dec 11 17:18:45 2015
-- Created on Fri May 6 15:44:32 2016
--
BEGIN TRANSACTION;
......@@ -270,7 +270,7 @@ CREATE TABLE exon (
is_current tinyint NOT NULL DEFAULT 1,
is_constitutive tinyint NOT NULL DEFAULT 0,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -328,7 +328,7 @@ CREATE TABLE gene (
is_current tinyint NOT NULL DEFAULT 1,
canonical_transcript_id integer NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -615,7 +615,7 @@ CREATE TABLE operon (
display_label varchar(255),
analysis_id smallint NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -633,7 +633,7 @@ CREATE TABLE operon_transcript (
display_label varchar(255),
analysis_id smallint NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -856,7 +856,7 @@ CREATE TABLE transcript (
is_current tinyint NOT NULL DEFAULT 1,
canonical_translation_id integer,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......@@ -907,7 +907,7 @@ CREATE TABLE translation (
seq_end integer NOT NULL,
end_exon_id integer NOT NULL,
stable_id varchar(128),
version smallint NOT NULL DEFAULT 1,
version smallint,
created_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
modified_date datetime NOT NULL DEFAULT '0000-00-00 00:00:00'
);
......
......@@ -78,3 +78,4 @@
2085 \N patch patch_83_84_b.sql|xref.version_default
2086 \N patch patch_83_84_c.sql|protein_feature_unique
2087 \N patch patch_83_84_d.sql|longer_synonym
2088 \N patch patch_83_84_e.sql|nullable_versions
1 \N schema_type variation
2 \N schema_version 84
2 \N schema_version 85
3 \N patch patch_83_84_a.sql|schema version
4 \N patch patch_84_85_a.sql|schema version
5 \N patch patch_84_85_b.sql|create sample_synonym
6 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
7 \N patch patch_85_86_d.sql|Making attrib_id auto_increment
8 \N patch patch_85_86_e.sql|drop the table tagged_variation_feature
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