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Commit 77b8fe0b authored by Ian Longden's avatar Ian Longden
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supposed to be on branch so removing last update

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...@@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c ...@@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c
# used by #02 # used by #02
name = HGNC name = HGNC
download = N download = N
order = 19 order = 30
priority = 1 priority = 1
prio_descr = ensembl_manual prio_descr = ensembl_manual
parser = HGNCParser parser = HGNCParser
...@@ -1104,19 +1104,19 @@ data_uri = ...@@ -1104,19 +1104,19 @@ data_uri =
[source HGNC::homo_sapiens#08] [source HGNC::homo_sapiens#08]
# used by #02 # used by #02
name = HGNC name = HGNC
download = Y download = N
order = 18 order = 30
priority = 100 priority = 100
prio_descr = desc_only prio_descr = desc_only
parser = HGNCParser parser = HGNCParser
release_uri = release_uri =
data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr data_uri =
[source HGNC::homo_sapiens] [source HGNC::homo_sapiens]
# Used by homo_sapiens # Used by homo_sapiens
name = HGNC name = HGNC
download = Y download = Y
order = 19 order = 30
priority = 4 priority = 4
prio_descr = havana prio_descr = havana
parser = HGNC_ENSTParser parser = HGNC_ENSTParser
...@@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega ...@@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega
[source HGNC::homo_sapiens#02] [source HGNC::homo_sapiens#02]
# Used by homo_sapiens # Used by homo_sapiens
name = HGNC name = HGNC
download = N download = Y
order = 19 order = 29
priority = 3 priority = 3
prio_descr = entrezgene_manual prio_descr = entrezgene_manual
parser = HGNCParser parser = HGNCParser
release_uri = release_uri =
data_uri = data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
[source HGNC::homo_sapiens#03] [source HGNC::homo_sapiens#03]
# Used by #02 # Used by #02
name = HGNC name = HGNC
download = N download = N
order = 19 order = 30
priority = 5 priority = 5
prio_descr = refseq_manual prio_descr = refseq_manual
parser = HGNCParser parser = HGNCParser
...@@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG ...@@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types # used by #02 which produces HGNC refseq and entrezgene types
name = HGNC name = HGNC
download = N download = N
order = 19 order = 30
priority = 6 priority = 6
prio_descr = entrezgene_mapped prio_descr = entrezgene_mapped
parser = HGNCParser parser = HGNCParser
...@@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG ...@@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types # used by #02 which produces HGNC refseq and entrezgene types
name = HGNC name = HGNC
download = N download = N
order = 19 order = 30
priority = 7 priority = 7
prio_descr = refseq_mapped prio_descr = refseq_mapped
parser = HGNCParser parser = HGNCParser
...@@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc ...@@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc
# Used by homo_sapiens # Used by homo_sapiens
name = RefSeq_dna name = RefSeq_dna
download = Y download = Y
order = 17 order = 25
priority = 1 priority = 1
prio_descr = ccds prio_descr = ccds
parser = RefSeq_CCDSParser parser = RefSeq_CCDSParser
...@@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human, ...@@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human,
# Used by homo_sapiens # Used by homo_sapiens
name = RefSeq_dna name = RefSeq_dna
download = Y download = Y
order = 15 order = 20
priority = 2 priority = 2
prio_descr = refseq prio_descr = refseq
parser = RefSeqParser parser = RefSeqParser
...@@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn ...@@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn
# Used by mus_musculus # Used by mus_musculus
name = RefSeq_dna name = RefSeq_dna
download = Y download = Y
order = 15 order = 20
priority = 2 priority = 2
prio_descr = refseq prio_descr = refseq
parser = RefSeqParser parser = RefSeqParser
...@@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f ...@@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f
# Used by mus_musculus # Used by mus_musculus
name = RefSeq_dna name = RefSeq_dna
download = Y download = Y
order = 17 order = 25
priority = 1 priority = 1
prio_descr = ccds prio_descr = ccds
parser = RefSeq_CCDSParser parser = RefSeq_CCDSParser
...@@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g ...@@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g
# Used by homo_sapiens # Used by homo_sapiens
name = RefSeq_peptide name = RefSeq_peptide
download = Y download = Y
order = 15 order = 20
priority = 1 priority = 1
prio_descr = prio_descr =
parser = RefSeqGPFFParser parser = RefSeqGPFFParser
...@@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens ...@@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens
source = InterproGO::MULTI source = InterproGO::MULTI
source = HGNC::homo_sapiens source = HGNC::homo_sapiens
source = HGNC::homo_sapiens#01 source = HGNC::homo_sapiens#01
source = HGNC::homo_sapiens#08 source = HGNC::homo_sapiens#02
source = IMGT/GENE_DB::homo_sapiens source = IMGT/GENE_DB::homo_sapiens
source = IPI::homo_sapiens source = IPI::homo_sapiens
source = Interpro::MULTI source = Interpro::MULTI
......
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