Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
E
ensembl
Manage
Activity
Members
Labels
Plan
Issues
0
Issue boards
Milestones
Iterations
Wiki
Requirements
Jira
Code
Merge requests
1
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Package Registry
Container Registry
Operate
Environments
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
ensembl-gh-mirror
ensembl
Commits
77b8fe0b
Commit
77b8fe0b
authored
15 years ago
by
Ian Longden
Browse files
Options
Downloads
Patches
Plain Diff
supposed to be on branch so removing last update
parent
6546fb88
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
misc-scripts/xref_mapping/xref_config.ini
+17
-17
17 additions, 17 deletions
misc-scripts/xref_mapping/xref_config.ini
with
17 additions
and
17 deletions
misc-scripts/xref_mapping/xref_config.ini
+
17
−
17
View file @
77b8fe0b
...
@@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c
...
@@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c
# used by #02
# used by #02
name
=
HGNC
name
=
HGNC
download
=
N
download
=
N
order
=
19
order
=
30
priority
=
1
priority
=
1
prio_descr
=
ensembl_manual
prio_descr
=
ensembl_manual
parser
=
HGNCParser
parser
=
HGNCParser
...
@@ -1104,19 +1104,19 @@ data_uri =
...
@@ -1104,19 +1104,19 @@ data_uri =
[source HGNC::homo_sapiens#08]
[source HGNC::homo_sapiens#08]
# used by #02
# used by #02
name
=
HGNC
name
=
HGNC
download
=
Y
download
=
N
order
=
18
order
=
30
priority
=
100
priority
=
100
prio_descr
=
desc_only
prio_descr
=
desc_only
parser
=
HGNCParser
parser
=
HGNCParser
release_uri
=
release_uri
=
data_uri
=
http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
data_uri
=
[source HGNC::homo_sapiens]
[source HGNC::homo_sapiens]
# Used by homo_sapiens
# Used by homo_sapiens
name
=
HGNC
name
=
HGNC
download
=
Y
download
=
Y
order
=
19
order
=
30
priority
=
4
priority
=
4
prio_descr
=
havana
prio_descr
=
havana
parser
=
HGNC_ENSTParser
parser
=
HGNC_ENSTParser
...
@@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega
...
@@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega
[source HGNC::homo_sapiens#02]
[source HGNC::homo_sapiens#02]
# Used by homo_sapiens
# Used by homo_sapiens
name
=
HGNC
name
=
HGNC
download
=
N
download
=
Y
order
=
1
9
order
=
2
9
priority
=
3
priority
=
3
prio_descr
=
entrezgene_manual
prio_descr
=
entrezgene_manual
parser
=
HGNCParser
parser
=
HGNCParser
release_uri
=
release_uri
=
data_uri
=
data_uri
=
http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
[source HGNC::homo_sapiens#03]
[source HGNC::homo_sapiens#03]
# Used by #02
# Used by #02
name
=
HGNC
name
=
HGNC
download
=
N
download
=
N
order
=
19
order
=
30
priority
=
5
priority
=
5
prio_descr
=
refseq_manual
prio_descr
=
refseq_manual
parser
=
HGNCParser
parser
=
HGNCParser
...
@@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
...
@@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types
# used by #02 which produces HGNC refseq and entrezgene types
name
=
HGNC
name
=
HGNC
download
=
N
download
=
N
order
=
19
order
=
30
priority
=
6
priority
=
6
prio_descr
=
entrezgene_mapped
prio_descr
=
entrezgene_mapped
parser
=
HGNCParser
parser
=
HGNCParser
...
@@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
...
@@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types
# used by #02 which produces HGNC refseq and entrezgene types
name
=
HGNC
name
=
HGNC
download
=
N
download
=
N
order
=
19
order
=
30
priority
=
7
priority
=
7
prio_descr
=
refseq_mapped
prio_descr
=
refseq_mapped
parser
=
HGNCParser
parser
=
HGNCParser
...
@@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc
...
@@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc
# Used by homo_sapiens
# Used by homo_sapiens
name
=
RefSeq_dna
name
=
RefSeq_dna
download
=
Y
download
=
Y
order
=
17
order
=
25
priority
=
1
priority
=
1
prio_descr
=
ccds
prio_descr
=
ccds
parser
=
RefSeq_CCDSParser
parser
=
RefSeq_CCDSParser
...
@@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human,
...
@@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human,
# Used by homo_sapiens
# Used by homo_sapiens
name
=
RefSeq_dna
name
=
RefSeq_dna
download
=
Y
download
=
Y
order
=
15
order
=
20
priority
=
2
priority
=
2
prio_descr
=
refseq
prio_descr
=
refseq
parser
=
RefSeqParser
parser
=
RefSeqParser
...
@@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn
...
@@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn
# Used by mus_musculus
# Used by mus_musculus
name
=
RefSeq_dna
name
=
RefSeq_dna
download
=
Y
download
=
Y
order
=
15
order
=
20
priority
=
2
priority
=
2
prio_descr
=
refseq
prio_descr
=
refseq
parser
=
RefSeqParser
parser
=
RefSeqParser
...
@@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f
...
@@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f
# Used by mus_musculus
# Used by mus_musculus
name
=
RefSeq_dna
name
=
RefSeq_dna
download
=
Y
download
=
Y
order
=
17
order
=
25
priority
=
1
priority
=
1
prio_descr
=
ccds
prio_descr
=
ccds
parser
=
RefSeq_CCDSParser
parser
=
RefSeq_CCDSParser
...
@@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g
...
@@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g
# Used by homo_sapiens
# Used by homo_sapiens
name
=
RefSeq_peptide
name
=
RefSeq_peptide
download
=
Y
download
=
Y
order
=
15
order
=
20
priority
=
1
priority
=
1
prio_descr
=
prio_descr
=
parser
=
RefSeqGPFFParser
parser
=
RefSeqGPFFParser
...
@@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens
...
@@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens
source
=
InterproGO::MULTI
source
=
InterproGO::MULTI
source
=
HGNC::homo_sapiens
source
=
HGNC::homo_sapiens
source
=
HGNC::homo_sapiens#01
source
=
HGNC::homo_sapiens#01
source
=
HGNC::homo_sapiens#0
8
source
=
HGNC::homo_sapiens#0
2
source
=
IMGT/GENE_DB::homo_sapiens
source
=
IMGT/GENE_DB::homo_sapiens
source
=
IPI::homo_sapiens
source
=
IPI::homo_sapiens
source
=
Interpro::MULTI
source
=
Interpro::MULTI
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment