Commit 78bc40f3 authored by Marek Szuba's avatar Marek Szuba
Browse files

Add some MicroRNA-specific tests to the RNAProduct test suite

parent 33c8d0e9
......@@ -20,6 +20,7 @@ use strict;
use warnings;
use Bio::EnsEMBL::Test::TestUtils;
use Bio::EnsEMBL::MicroRNA;
use Bio::EnsEMBL::RNAProduct;
use Bio::EnsEMBL::Transcript;
......@@ -297,10 +298,35 @@ cmp_ok(scalar @$rp_exts, '>', 0, 'Can fetch RNAProduct by external ID');
# TODO: More RNAProductAdaptor tests
# Test generic_count(), inherited method from BaseAdaptor
is($rp_a->generic_count(), @{$rp_a->list_dbIDs()}, "Number of features from generic_count is equal to the number of dbIDs from list_dbIDs");
# MicroRNA-specific tests
subtest 'MicroRNA tests' => sub {
my $mirna;
$mirna = Bio::EnsEMBL::MicroRNA->new();
ok($mirna, 'MicroRNA constructor works without arguments');
isa_ok($mirna, 'Bio::EnsEMBL::MicroRNA', 'miRNA object from new()');
$mirna = Bio::EnsEMBL::MicroRNA->new(
-SEQ_START => 314,
-ARM => 3
ok($mirna, 'MicroRNA constructor works with arguments');
is($mirna->arm(), 3, 'MicroRNA-specific parameters set OK');
is($mirna->start(), 314, 'Generic RNAProduct parameters set OK');
$mirna = $rp_a->fetch_by_dbID(1);
ok($mirna, 'Can fetch MicroRNA from RNAProductAdaptor');
isa_ok($mirna, 'Bio::EnsEMBL::MicroRNA', 'miRNA object from RNAProductAdaptor');
isnt($mirna->arm(), undef, 'Can retrieve miRNA arm value from DB');
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