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ensembl-gh-mirror
ensembl
Commits
7989c9b5
Commit
7989c9b5
authored
Aug 04, 2008
by
Glenn Proctor
Browse files
Typos.
parent
1f2c9b6b
Changes
1
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5 deletions
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-5
modules/Bio/EnsEMBL/Registry.pm
modules/Bio/EnsEMBL/Registry.pm
+6
-5
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modules/Bio/EnsEMBL/Registry.pm
View file @
7989c9b5
...
...
@@ -824,8 +824,9 @@ sub add_adaptor {
sub
get_adaptor
{
my
(
$class
,
$species
,
$group
,
$type
)
=
@_
;
$species
=
$class
->
get_alias
(
$species
);
my
%dnadb_adaptors
=
qw(sequence 1 assemblymapper 1 karyotypeband 1 repeatfeature 1 coordsystem 1 assemblyexceptionfeature 1 )
;
my
$dnadb_group
=
$registry_register
{
$species
}{
lc
(
$group
)}{
_DNA
};
...
...
@@ -1078,8 +1079,8 @@ my $self = shift;
=head2 load_registry_from_url
Arg [1]
: string $url
Example : load_registry_from_url(
"
mysql://anonymous@ensembldb.ensembl.org:3306
"
);
Arg [1] : string $url
Example : load_registry_from_url(mysql://anonymous@ensembldb.ensembl.org:3306);
Description: Will load the correct versions of the ensembl databases for the
software release it can find on a database instance into the
registry. Also adds a set of standard aliases. The url format is:
...
...
@@ -1758,7 +1759,7 @@ sub load_registry_from_db {
);
Bio::EnsEMBL::Utils::
ConfigRegistry
->
add_alias
(
-
species
=>
"
Procavia
capensis
",
-
species
=>
"
Procavia
_
capensis
",
-
alias
=>
[
'
rock_hyrax
',
'
hyrax
',
'
Procaviacapensis
'
]
);
...
...
@@ -1773,7 +1774,7 @@ sub load_registry_from_db {
);
Bio::EnsEMBL::Utils::
ConfigRegistry
->
add_alias
(
-
species
=>
"
Tarsius
syrichta
",
-
species
=>
"
Tarsius
_
syrichta
",
-
alias
=>
[
'
philippine tarsier
',
'
tarsier
',
'
Tarsiussyrichta
'
]
);
...
...
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