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Commit 8083ff44 authored by Andy Yates's avatar Andy Yates
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updating the figure on how long it takes to run. The original estimate only...

updating the figure on how long it takes to run. The original estimate only took CPU time into account. This code does a lot in the DB so CPU usage is low
parent e288c7dd
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......@@ -20,8 +20,13 @@ compara GeneTree
Command to create the stable_id database on ens-staging1 and copy stable ids from databases on ens-staging1 and 2:
bsub -q normal -M 1500000 -R'select[mem>1500] rusage[mem=1500]' -o ./stable_ids_68.out -e ./stable_ids_68.err perl ensembl/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl -lhost ens-staging1 -luser ensadmin -lpass xxx -create -host ens-staging1 -host ens-staging2 -user ensro
RELEASE=70
DIR=ensembl/misc-scripts/stable_id_lookup
USR=''
PASS=''
cd $DIR
bsub -q normal -M 1500000 -R'select[mem>1500] rusage[mem=1500]' -o ./stable_ids_${RELEASE}.out -e ./stable_ids_${RELEASE}.err perl populate_stable_id_lookup.pl -lhost ens-staging1 -luser $USR -lpass $PASS -create -host ens-staging1 -host ens-staging2 -user ensro
For release 68 the job consumed 1Gb of memory and took 818.61 sec to run.
For release 70 the job consumed 1Gb of memory and took 1hr 40 minutes to run
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