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Commit 81a03a93 authored by Andy Yates's avatar Andy Yates
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Filter was not firing correctly

parent 2223def0
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......@@ -51,7 +51,7 @@ sub get_Slices {
my $sa = $dba->get_SliceAdaptor();
my @slices = @{$sa->fetch_all('toplevel', undef, 1, undef, undef)};
if(!$filter_human) {
if($filter_human) {
my $production_name = $self->production_name();
if($production_name eq 'homo_sapiens') {
my ($cs) = @{$dba->get_CoordSystem()->fetch_all()};
......@@ -59,7 +59,14 @@ sub get_Slices {
if($cs->version() ne $expected) {
throw sprintf(q{Cannot continue as %s's coordinate system %s is not the expected %s }, $production_name, $cs->version(), $expected);
}
@slices = grep { $_->seq_region_name() eq 'Y' && $_->end() < 2649521 } @slices;
@slices = grep {
if($_->seq_region_name() eq 'Y' && $_->end() < 2649521) {
0;
}
else {
1;
}
} @slices;
}
}
......
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