misc-scripts/CreateFile4CopyDBoverServer.pl

misc-scripts/assembly/AssemblyMapper/BlastzAligner.pm

misc-scripts/assembly/EXAMPLE.use_mapping.pl

misc-scripts/assembly/README

misc-scripts/assembly/align_by_clone_identity.pl

misc-scripts/assembly/align_nonident_regions.pl

misc-scripts/assembly/align_nonident_regions_wrapper.pl

misc-scripts/assembly/check_mapping.pl

misc-scripts/assembly/compare_assemblies.pl

misc-scripts/assembly/find_overlaps.pl

misc-scripts/assembly/fix_asm_overlaps.pl

misc-scripts/assembly/fix_overlaps.pl

misc-scripts/assembly/load_alternative_assembly.pl

misc-scripts/assembly/merge_cmp_gaps.pl

misc-scripts/db/cleanup_tmp_tables.pl

misc-scripts/doxygen_filter/EnsEMBL/PerlFilter.pm

misc-scripts/id_mapping/README

misc-scripts/id_mapping/dump_by_seq_region.pl

misc-scripts/id_mapping/dump_cache.pl

misc-scripts/id_mapping/fake_stable_id_mapping.pl