Changed references to protein_feature.hit_id to hit_name to reflect column rename in release 51.

modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm

@@ -340,7 +340,7 @@ sub fetch_all_by_domain {
            transcript tr,
            translation tl
       WHERE i.interpro_ac = ?
-      AND   i.id = pf.hit_id
+      AND   i.id = pf.hit_name
       AND   pf.translation_id = tl.translation_id
       AND   tr.transcript_id = tl.transcript_id
       AND   tr.is_current = 1
@@ -1205,7 +1205,7 @@ sub get_Interpro_by_geneid {
           AND   t.is_current = 1
           AND   tl.transcript_id = t.transcript_id
 	  AND	tl.translation_id = pf.translation_id 
-	  AND	i.id = pf.hit_id 
+	  AND	i.id = pf.hit_name
 	  AND	i.interpro_ac = x.dbprimary_acc
   );
    

modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm

@@ -86,9 +86,9 @@ sub fetch_all_by_translation_id {
   my $sth = $self->prepare
     ("SELECT protein_feature_id, p.seq_start, p.seq_end, p.analysis_id, " .
      "       p.score, p.perc_ident, p.evalue, p.hit_start, p.hit_end, " .
-     "       p.hit_id, x.display_label, i.interpro_ac " .
+     "       p.hit_name, x.display_label, i.interpro_ac " .
      "FROM   protein_feature p " .
-     "LEFT JOIN interpro AS i ON p.hit_id = i.id " .
+     "LEFT JOIN interpro AS i ON p.hit_name = i.id " .
      "LEFT JOIN xref AS x ON x.dbprimary_acc = i.interpro_ac " .
      "WHERE p.translation_id = ?");
 
@@ -150,10 +150,10 @@ sub fetch_by_dbID{
   my $sth = $self->prepare(
 	      "SELECT p.seq_start, p.seq_end, p.analysis_id, " .
         "       p.score, p.perc_ident, p.evalue, " .
-        "       p.hit_start, p.hit_end, p.hit_id, " .
+        "       p.hit_start, p.hit_end, p.hit_name, " .
         "       x.display_label, i.interpro_ac " .
         "FROM   protein_feature p " .
-        "LEFT JOIN interpro AS i ON p.hit_id = i.id " .
+        "LEFT JOIN interpro AS i ON p.hit_name = i.id " .
         "LEFT JOIN xref AS x ON x.dbprimary_acc = i.interpro_ac " .
         "WHERE  p.protein_feature_id = ?");
   
@@ -245,7 +245,7 @@ sub store {
                    "            analysis_id    = ?, ".
                    "            hit_start      = ?, ".
                    "            hit_end        = ?, ".
-                   "            hit_id         = ?, ".
+                   "            hit_name       = ?, ".
                    "            score          = ?, ".
                    "            perc_ident     = ?, ".
                    "            evalue         = ?");

modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm

@@ -821,7 +821,7 @@ sub get_Interpro_by_transid {
       WHERE   tsi.stable_id = ?
       AND     tl.transcript_id = tsi.transcript_id
       AND     tl.translation_id = pf.translation_id
-      AND     i.id = pf.hit_id
+      AND     i.id = pf.hit_name
       AND     i.interpro_ac = x.dbprimary_acc
       AND     tsi.transcript_id = t.transcript_id
       AND     t.is_current = 1