Skip to content
Snippets Groups Projects
Commit 8882e885 authored by Jan-hinnerk Vogel's avatar Jan-hinnerk Vogel
Browse files

sources for drosophila added

parent efc52b58
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
misc-scripts/xref_mapping/sql/populate_metadata.sql
+ 33
− 9
View file @ 8882e885
......@@ -49,12 +49,13 @@ INSERT INTO source VALUES (1030, 'PDB', 1, 'N', 2);
INSERT INTO source VALUES (1040, 'protein_id', 1, 'N', 2);
INSERT INTO source VALUES (1050, 'PUBMED', 1, 'N', 2);
INSERT INTO source VALUES (1060, 'MEDLINE', 1, 'N', 2);
#INSERT INTO source VALUES (1100, 'LocusLink', 1, 'N', 2);
INSERT INTO source VALUES (1110, 'EntrezGene', 1, 'N', 2);
INSERT INTO source VALUES (1070, 'GO', 1, 'Y',5);
INSERT INTO source VALUES (1080, 'MarkerSymbol', 1, 'Y',2);
INSERT INTO source VALUES (1090, 'HUGO', 1, 'Y',2);
#INSERT INTO source VALUES (1100, 'LocusLink', 1, 'N', 2);
INSERT INTO source VALUES (1110, 'EntrezGene', 1, 'N', 2);
INSERT INTO source VALUES (1200, 'RGD', 1, 'Y',2);
INSERT INTO source VALUES (1300, 'Interpro', 1, 'Y', 2);
INSERT INTO source VALUES (1400, 'ZFIN_ID', 1, 'Y', 2);
......@@ -73,6 +74,35 @@ INSERT INTO source VALUES (2440, 'wormbase_pseudogene', 1, 'N', 4);
# --------------------------------------------------------------------------------
### DROSOPHILA
## Uniprot
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7227, 'ftp://ftp.ebi.ac.uk/pub/databases/SPproteomes/swissprot_files/proteomes/7227.SPC', '', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7227, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', '', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 7227, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', '', now(), now(), "UniProtParser");
## refseq
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
## GO
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 7227,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser");
## Interpro
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 7227,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', '', now(), now(), "InterproParser");
## UniGene
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (6, 7227,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Dm.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Dm.data.gz', '', now(), now(), "UniGeneParser");
### HUMAN
## uniprot
......@@ -350,20 +380,14 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date
## Uniprot
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', '', now(), now(), "UniProtParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 7719, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', '', now(), now(), "UniProtParser");
## refseq
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz', '', now(), now(), "RefSeqParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz', '', now(), now(), "RefSeqParser");
INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7719,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz', '', now(), now(), "RefSeqParser");
## GO
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment