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Commit 895f64ca authored by Andy Yates's avatar Andy Yates
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A number of params are missing their - flag. That means the new XS rearrange...

A number of params are missing their - flag. That means the new XS rearrange does not work (it is a bug not a feature)
parent e12b0783
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...@@ -325,8 +325,8 @@ is_rows(0, $db, "gene_attrib", "where gene_id = ? ", [$gene_id]); ...@@ -325,8 +325,8 @@ is_rows(0, $db, "gene_attrib", "where gene_id = ? ", [$gene_id]);
# #
my $gene2 = $ga->fetch_by_stable_id($stable_id2); my $gene2 = $ga->fetch_by_stable_id($stable_id2);
my $batch = {$gene->dbID() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val1'), Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val2')], my $batch = {$gene->dbID() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val1'), Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val2')],
$gene2->dbID() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val3'),]}; $gene2->dbID() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val3'),]};
my $current_rows = count_rows($db, 'gene_attrib'); my $current_rows = count_rows($db, 'gene_attrib');
$aa->store_batch_on_Gene($batch); $aa->store_batch_on_Gene($batch);
my $new_rows = count_rows($db, 'gene_attrib'); my $new_rows = count_rows($db, 'gene_attrib');
...@@ -339,8 +339,8 @@ is(@attribs, 2, "Two attribs available for gene"); ...@@ -339,8 +339,8 @@ is(@attribs, 2, "Two attribs available for gene");
is(@attribs, 1, "One attrib stored for gene2"); is(@attribs, 1, "One attrib stored for gene2");
my $slice2 = $slice_adaptor->fetch_by_region('chromosome', 'X'); my $slice2 = $slice_adaptor->fetch_by_region('chromosome', 'X');
my $batch = {$slice->get_seq_region_id() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val1'), Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val2')], my $batch = {$slice->get_seq_region_id() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val1'), Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val2')],
$slice2->get_seq_region_id() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', VALUE => 'val3'),]}; $slice2->get_seq_region_id() => [Bio::EnsEMBL::Attribute->new(-NAME => 'test_name2', -CODE => 'test_code2', -DESCRIPTION => 'test_desc2', -VALUE => 'val3'),]};
my $current_rows = count_rows($db, 'seq_region_attrib'); my $current_rows = count_rows($db, 'seq_region_attrib');
$aa->store_batch_on_Slice($batch); $aa->store_batch_on_Slice($batch);
my $new_rows = count_rows($db, 'seq_region_attrib'); my $new_rows = count_rows($db, 'seq_region_attrib');
......
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