Have updated the link to get the EFO.obo file from http://www.ebi.ac.uk/efo/efo.obo

 to http://efo.svn.sourceforge.net/viewvc/efo/trunk/src/efoinobo/efo.obo.
We are now getting the EFO.obo file from the head.

misc-scripts/ontology/scripts/get_OBO_files.ksh

@@ -7,7 +7,7 @@ wget -O GO.obo "http://www.geneontology.org/ontology/obo_format_1_2/gene_ontolog
 wget -O SO.obo "http://downloads.sourceforge.net/project/song/Sequence%20Ontology/so_2_5/so.obo2.5"
 
 # EFO   - Experimental Factor Ontology
-wget -O EFO.obo "http://www.ebi.ac.uk/efo/efo.obo"
+wget -O EFO.obo "http://efo.svn.sourceforge.net/viewvc/efo/trunk/src/efoinobo/efo.obo"
 
 exit