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Commit 921bbbc4 authored by Graham McVicker's avatar Graham McVicker
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supercontig coord system is also tagged with assembly version

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......@@ -22,13 +22,13 @@ sub create_coord_systems {
my @coords =
(["chromosome" , $ass_def, "default_version", 1],
["supercontig", undef, "default_version", 2],
["supercontig", $ass_def, "default_version", 2],
["clone" , undef, "default_version", 3],
["chunk" , undef, "default_version,sequence_level", 4]);
my @assembly_mappings = ("chromosome:$ass_def|chunk",
"clone|chunk",
"supercontig|chunk");
"supercontig:$ass_def|chunk");
my %cs = (gene => ['supercontig','chromosome'],
transcript => ['supercontig','chromosome'],
......
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