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ensembl-gh-mirror
ensembl
Commits
931f34a4
Commit
931f34a4
authored
12 years ago
by
Monika Komorowska
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RFAM xrefs need to be parsed using CoreXrefParser for EnsemblGenomes
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f0f5d623
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misc-scripts/xref_mapping/XrefParser/RFAMParser_EG.pm
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misc-scripts/xref_mapping/XrefParser/RFAMParser_EG.pm
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misc-scripts/xref_mapping/XrefParser/RFAMParser_EG.pm
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f0f5d623
package
XrefParser::
RFAMParser_EG
;
#RFAM Parser which loads the registry from the staging servers for EnsemblGenomes databases.
use
strict
;
use
warnings
;
use
Carp
;
use
DBI
;
use
base
qw( XrefParser::BaseParser)
;
use
base
qw( XrefParser::RFAMParser)
;
use
Bio::EnsEMBL::
Registry
;
sub
load_registry
{
my
(
$self
,
$registry
)
=
@_
;
$registry
->
load_registry_from_multiple_dbs
(
{
'
-host
'
=>
'
mysql-eg-staging-1.ebi.ac.uk
',
'
-port
'
=>
4160
,
'
-user
'
=>
'
ensro
',
},
{
'
-host
'
=>
'
mysql-eg-staging-2.ebi.ac.uk
',
'
-port
'
=>
4275
,
'
-user
'
=>
'
ensro
',
},
);
return
$registry
;
}
1
;
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