patches

sql/patch_48_49_b.sql

+# patch_48_49_b.sql
+#
+# title: new canonical transcript column n gene table
+#
+# description:
+# Add canonical_transcript column to gene table
+
+ALTER TABLE gene ADD COLUMN canonical_transcript INT(10) UNSIGNED;
+
+# patch identifier
+INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_48_49_b.sql|new_canonical_transcript_column');

sql/patch_48_49_c.sql

+# patch_48_49_c.sql
+#
+# title: regulatory_support_removal
+#
+# description:
+# regulatory tables to be removed from database (now done by func gen)
+
+DELETE object_xref FROM object_xref where ensembl_object_type = "regulatory_factor";
+DELETE object_xref FROM object_xref where ensembl_object_type = "regulatory_feature";
+
+ALTER TABLE object_xref CHANGE COLUMN ensembl_object_type
+  ensembl_object_type ENUM('RawContig', 'Transcript', 'Gene',
+                                   'Translation');
+
+DROP TABLE regulatory_factor;
+DROP TABLE regulatory_factor_coding;
+DROP TABLE regulatory_feature;
+DROP TABLE regulatory_feature_object;
+DROP TABLE regulatory_search_region;
+
+# patch identifier
+INSERT INTO meta (meta_key, meta_value) VALUES ('patch', 'patch_48_49_c.sql|regulatory_support_removal');
+
+
+