put analysis_id in indices

sql/table.sql

@@ -221,8 +221,8 @@ CREATE TABLE simple_feature (
   score double,
 
   PRIMARY KEY ( simple_feature_id ),
-  KEY contig_idx( contig_id, analysis_id, contig_start ),
-  KEY analysis_idx( analysis_id, contig_id ),
+  KEY contig_idx( contig_id, contig_start ),
+  KEY analysis_idx( analysis_id ),
   KEY hit_idx( display_label )
 ) MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
 
@@ -247,7 +247,8 @@ CREATE TABLE protein_align_feature (
 
   PRIMARY KEY (	protein_align_feature_id ),
   KEY hit_idx( hit_name ),
-  KEY ctg_idx( contig_id, contig_start, analysis_id )
+  KEY ctg_idx( contig_id, contig_start ),
+  KEY ana_idx( analysis_id )
 ) MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
 
 
@@ -272,7 +273,8 @@ CREATE TABLE dna_align_feature (
 
   PRIMARY KEY ( dna_align_feature_id ),
   KEY hit_idx( hit_name ),
-  KEY ctg_idx( contig_id, analysis_id, contig_start )
+  KEY ctg_idx( contig_id, contig_start ),
+  KEY ana_idx( analysis_id )
 ) MAX_ROWS=100000000 AVG_ROW_LENGTH=80;
 
 
@@ -306,7 +308,7 @@ CREATE TABLE repeat_feature (
   score double,
   
   PRIMARY KEY (	repeat_feature_id ),
-  KEY contig_idx( contig_id, contig_start, analysis_id ),
+  KEY contig_idx( contig_id, contig_start ),
   KEY repeat_idx( repeat_consensus_id, contig_id, contig_start ),
   KEY analysis_idx( analysis_id )
 ) MAX_ROWS=100000000 AVG_ROW_LENGTH=80;