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Commit 96916d74 authored by Ian Longden's avatar Ian Longden
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changed -m bc_host to -R select[linux] as bc_hosts no longer in use

parent 3ac3e7ee
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......@@ -130,7 +130,7 @@ sub submit_exonerate {
my $output = $self->get_class_name() . "_" . $ensembl_type . "_" . "\$LSB_JOBINDEX.map";
my @main_bsub = ( 'bsub', '-m bc_hosts', '-R' .'rusage[tmp='.$disk_space_needed.']', '-J' . $unique_name . "[1-$num_jobs]%200", '-o', "$prefix.%J-%I.out", '-e', "$prefix.%J-%I.err");
my @main_bsub = ( 'bsub', '-R' .'select[linux] -Rrusage[tmp='.$disk_space_needed.']', '-J' . $unique_name . "[1-$num_jobs]%200", '-o', "$prefix.%J-%I.out", '-e', "$prefix.%J-%I.err");
# my @main_bsub = ( 'bsub', '-J' . $unique_name . "[1-$num_jobs]", '-o', "$prefix.%J-%I.out", '-e', "$prefix.%J-%I.err");
......@@ -171,6 +171,9 @@ EOF
$jobid = $1;
print "LSF job ID for main mapping job: $jobid (job array with $num_jobs jobs)\n"
}
else{
print "ERROR:? $_\n";
}
}
close(BSUB_READER);
} else {
......
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