Commit 997a67f4 authored by Arnaud Kerhornou's avatar Arnaud Kerhornou
Browse files

Added 8 Aspergillus species; also added a RNAMMER and TRNASCAN Sources

parent 13999312
......@@ -2541,6 +2541,28 @@ parser = ncRNAParser
release_uri =
data_uri = file:/lustre/work1/ensembl/kmegy/Culex/Xrefs/culex_ncRNAxref_sw4.txt
[source RNAMMER::MULTI-asp]
# Used by aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri
name = RNAMMER
download = N
order = 70
priority = 1
prio_descr =
parser =
release_uri =
data_uri =
[source TRNASCAN-SE::MULTI-asp]
# Used by aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri
name = TRNASCAN-SE
download = N
order = 70
priority = 1
prio_descr =
parser =
release_uri =
data_uri =
[source wormpep_id::caenorhabditis_elegans]
# Used by caenorhabditis_elegans
name = wormpep_id
......@@ -2744,6 +2766,138 @@ source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
#source = Uniprot/Varsplic::MULTI
[species aspergillus_clavatus]
taxonomy_id = 5057
taxonomy_id = 344612
aliases = aspergillusclavatus, aclavatus, Aspergillus clavatus, Aspergillus clavatus NRRL 1
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_flavus]
taxonomy_id = 5059
taxonomy_id = 332952
aliases = aspergillusflavus, aflavus, Aspergillus flavus, Aspergillus flavus NRRL3357
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_fumigatus]
taxonomy_id = 5085
taxonomy_id = 330879
aliases = aspergillusfumigatus, afumigatus, Aspergillus fumigatus, Aspergillus fumigatus Af293,Sartorya fumigata,sartoryafumigata,sfumigata
source = EntrezGene::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_nidulans]
taxonomy_id = 162425
taxonomy_id = 227321
aliases = aspergillusnidulans, anidulans, Aspergillus nidulellus, aspergillusnidulellus, anidulellus, Emericella nidulans, emericellanidulans, enidulans, Aspergillus nidulans FGSC A4
source = EntrezGene::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_niger]
taxonomy_id = 5061
taxonomy_id = 425011
aliases = aspergillusniger, aniger, Aspergillus niger, Aspergillus niger CBS 513.88
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_oryzae]
taxonomy_id = 5062
taxonomy_id = 510516
aliases = aspergillusoryzae, aoryzae, Aspergillus oryzae, Aspergillus oryzae RIB40
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species aspergillus_terreus]
taxonomy_id = 33178
taxonomy_id = 341663
aliases = aspergillusterreus, aterreus, Aspergillus terreus, Aspergillus terreus NIH2624
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species neosartorya_fischeri]
taxonomy_id = 36630
taxonomy_id = 331117
aliases = neosartoryafischeri, nfischeri, Neosartorya fischeri, Neosartorya fischeri NRRL 181
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-fungi
source = RefSeq_peptide::MULTI-fungi
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = RFAM::MULTI
source = TRNASCAN-SE::MULTI-asp
source = RNAMMER::MULTI-asp
[species bos_taurus]
taxonomy_id = 9913
aliases = bostaurus, btaurus, cow
......
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