changes from latest run (mouse NCBIM36 to 37):
- allow mismatches - fixes to cope with changes to ConversionSupport->sort_chromosomes() - allow most scripts (with the exception of load_alternative_assembly.pl) to use source and target dbs on different hosts - various other improvements
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- misc-scripts/assembly/AssemblyMapper/BlastzAligner.pm 6 additions, 4 deletionsmisc-scripts/assembly/AssemblyMapper/BlastzAligner.pm
- misc-scripts/assembly/README 3 additions, 0 deletionsmisc-scripts/assembly/README
- misc-scripts/assembly/align_by_clone_identity.pl 13 additions, 6 deletionsmisc-scripts/assembly/align_by_clone_identity.pl
- misc-scripts/assembly/align_nonident_regions.pl 11 additions, 4 deletionsmisc-scripts/assembly/align_nonident_regions.pl
- misc-scripts/assembly/align_nonident_regions_wrapper.pl 9 additions, 1 deletionmisc-scripts/assembly/align_nonident_regions_wrapper.pl
- misc-scripts/assembly/check_mapping.pl 8 additions, 5 deletionsmisc-scripts/assembly/check_mapping.pl
- misc-scripts/assembly/compare_assemblies.pl 1 addition, 1 deletionmisc-scripts/assembly/compare_assemblies.pl
- misc-scripts/assembly/fix_overlaps.pl 1 addition, 1 deletionmisc-scripts/assembly/fix_overlaps.pl
- misc-scripts/assembly/mapping_stats.pl 7 additions, 3 deletionsmisc-scripts/assembly/mapping_stats.pl
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