misc-scripts/analysis_description/apply_rules.pl

misc-scripts/anopheles_scripts/check_stops.pl

misc-scripts/anopheles_scripts/get_transposon_repeats.pl

misc-scripts/assembly/EXAMPLE.use_mapping.pl

misc-scripts/assembly/align_by_clone_identity.pl

misc-scripts/assembly/align_nonident_regions.pl

misc-scripts/assembly/align_nonident_regions_wrapper.pl

misc-scripts/assembly/check_mapping.pl

misc-scripts/assembly/compare_assemblies.pl

misc-scripts/assembly/find_overlaps.pl

misc-scripts/assembly/fix_overlaps.pl

misc-scripts/assembly/load_alternative_assembly.pl

misc-scripts/assembly/mapping_stats.pl