For Ixodes Xrefs

misc-scripts/xref_mapping/XrefMapper/ixodes_scapularis.pm

+package XrefMapper::ixodes_scapularis;
+
+use  XrefMapper::BasicMapper;
+
+use vars '@ISA';
+
+@ISA = qw{ XrefMapper::BasicMapper };
+
+sub get_set_lists {
+  return [["ExonerateGappedBest1_agam", ["ixodes_scapularis","*"]]];  #use same parameters as Anoph. and Culex
+}
+
+#Reverse order: second one has higher priority!
+sub gene_description_sources {
+  return ("Uniprot/SWISSPROT",
+	  "Ixodes_ManualAnnotation",
+  ) ;
+}
+
+#Reverse order: second one has higher priority!
+sub transcript_display_xref_sources {
+  my @list = qw(Uniprot/SWISSPROT
+		Ixodes_ManualAnnotation
+                );
+
+  my %ignore;
+  $ignore{"EntrezGene"}= 'FROM:RefSeq_[pd][en][pa].*_predicted';
+
+  return [\@list,\%ignore];
+
+}
+
+# regexps to match any descriptons we want to filter out
+sub gene_description_filter_regexps {
+  return ();
+}1;