Commit a2f6ec51 authored by Monika Komorowska's avatar Monika Komorowska
Browse files

link RefSeq_dna to mRNA and nc_RNA using dependent option

parent ad7aab1c
......@@ -409,7 +409,7 @@ priority = 1
prio_descr =
parser = CCDSParser
release_uri =
data_uri = script:host=>ens-livemirror,dbname=>ccds_human_65,tran_name=>ENST,
data_uri = script:host=>ens-livemirror,dbname=>ccds_human_66,tran_name=>ENST,
[source CCDS::mus_musculus]
# Used by mus_musculus
......@@ -420,7 +420,7 @@ priority = 1
prio_descr =
parser = CCDSParser
release_uri =
data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_65,tran_name=>ENSMUST,
data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_66,tran_name=>ENSMUST,
[source Celera_Pep::anopheles_gambiae]
# Used by anopheles_gambiae
......@@ -594,7 +594,7 @@ order = 100
priority = 1
prio_descr =
parser = FantomParser
dependent = Uniprot/SPTREMBL,Uniprot/SWISSPROT::MULTI
dependent = Uniprot/SPTREMBL,Uniprot/SWISSPROT
release_uri =
data_uri = ftp://fantom.gsc.riken.jp/FANTOM3/DDBJ/DDBJ_fantom3_HTC_accession.txt.gz
......@@ -1002,7 +1002,7 @@ parser = GOSlimParser
dependent = GO
release_uri =
#data_uri = script:
data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_65,
data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_66,
[source goslim_goa::EG]
# Used by Ensembl Genomes
......@@ -1147,7 +1147,7 @@ priority = 2
prio_descr = ccds
parser = HGNC_CCDSParser
release_uri =
data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>ens-livemirror,dbname=>ccds_human_65,
data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>ens-livemirror,dbname=>ccds_human_66,
[source HGNC::homo_sapiens#07]
......@@ -1639,12 +1639,14 @@ release_uri =
[source RefSeq_mRNA::MULTI]
# Special source used in RefSeqParser. No species uses this source.
# dependent source is used to provide a link between RefSeq_dna source in SubmitMapper
name = RefSeq_mRNA
download = N
order = 20
priority = 1
prio_descr = refseq
parser = RefSeqParser
dependent = RefSeq_dna
release_uri =
[source RefSeq_mRNA::CCDS]
......@@ -1665,6 +1667,7 @@ order = 20
priority = 1
prio_descr =
parser = RefSeqParser
dependent = RefSeq_dna
release_uri =
[source RefSeq_mRNA_predicted::MULTI]
......@@ -1675,6 +1678,7 @@ order = 20
priority = 1
prio_descr = refseq
parser = RefSeqParser
dependent = RefSeq_dna
release_uri =
[source RefSeq_mRNA_predicted::CCDS]
......@@ -1695,6 +1699,7 @@ order = 20
priority = 1
prio_descr =
parser = RefSeqParser
dependent = RefSeq_dna
release_uri =
[source RefSeq_dna::MULTI-vertebrate_mammalian]
......@@ -1854,7 +1859,7 @@ priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
release_uri =
data_uri = script:host=>ens-livemirror,dbname=>ccds_human_65,
data_uri = script:host=>ens-livemirror,dbname=>ccds_human_66,
[source RefSeq_dna::homo_sapiens#01]
# Used by homo_sapiens
......@@ -1887,7 +1892,7 @@ priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
release_uri =
data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_65,
data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_66,
[source RefSeq_dna::pan_troglodytes]
......@@ -3057,7 +3062,7 @@ download = N
order = 70
priority = 1
prio_descr =
parser = comes via ncRNAParser
parser = comes via ncRNA_DBParser
release_uri =
data_uri =
......@@ -3068,7 +3073,7 @@ download = N
order = 70
priority = 1
prio_descr =
parser = comes via ncRNAParser
parser = comes via ncRNA_DBParser
release_uri =
data_uri =
......
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