Merge pull request #96 from Ensembl/feature/deprecate
Feature/deprecate
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- DEPRECATED.md 168 additions, 0 deletionsDEPRECATED.md
- modules/Bio/EnsEMBL/AssemblyMapper.pm 5 additions, 5 deletionsmodules/Bio/EnsEMBL/AssemblyMapper.pm
- modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm 5 additions, 5 deletionsmodules/Bio/EnsEMBL/ChainedAssemblyMapper.pm
- modules/Bio/EnsEMBL/DBEntry.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DBEntry.pm
- modules/Bio/EnsEMBL/DBSQL/AltAlleleGroupAdaptor.pm 4 additions, 4 deletionsmodules/Bio/EnsEMBL/DBSQL/AltAlleleGroupAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm 3 additions, 3 deletionsmodules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm 1 addition, 0 deletionsmodules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm 4 additions, 4 deletionsmodules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm 2 additions, 4 deletionsmodules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm 14 additions, 14 deletionsmodules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/DBConnection.pm 2 additions, 2 deletionsmodules/Bio/EnsEMBL/DBSQL/DBConnection.pm
- modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm 3 additions, 3 deletionsmodules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/DataFileAdaptor.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DBSQL/DataFileAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm 2 additions, 2 deletionsmodules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm 7 additions, 7 deletionsmodules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm 4 additions, 7 deletionsmodules/Bio/EnsEMBL/DBSQL/MetaContainer.pm
- modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm 2 additions, 2 deletionsmodules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm
- modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm
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