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ensembl-gh-mirror
ensembl
Commits
aa689741
Commit
aa689741
authored
Jul 31, 2012
by
Monika Komorowska
Browse files
added output message that xrefs will be created during the mapping stage
parent
c14bd627
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misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm
misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm
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misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm
View file @
aa689741
...
...
@@ -37,6 +37,10 @@ sub run {
my
$names
=
$species_id_to_names
->
{
$species_id
};
my
$contents_lookup
=
$self
->
_get_contents
(
$files
,
$verbose
);
my
$active
=
$self
->
_is_active
(
$contents_lookup
,
$names
,
$verbose
);
if
(
$active
&&
$verbose
)
{
print
"
ArrayExpress xrefs will be created when running xref_mapper.pl/DirectXrefs.pm as gene stable ids are required to create the xrefs
\n
";
}
$self
->
add_meta_pair
(
$self
->
meta_key
(),
$active
);
$self
->
add_meta_pair
('
species_id
',
$species_id
);
...
...
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