replaced with culex_quinquefasciatus.pm

misc-scripts/xref_mapping/XrefMapper/culex_pipiens.pm

-package XrefMapper::culex_pipiens;
-
-use  XrefMapper::BasicMapper;
-use  XrefMapper::VBCoordinateMapper;
-
-use vars '@ISA';
-
-@ISA = qw{ XrefMapper::BasicMapper };
-
-sub set_methods{
- 
-  my $default_method = 'ExonerateGappedBest1_55_perc_id';
-  my %override_method_for_source = (  
-	   ExonerateGappedBest5_55_perc_id => ['RefSeq_mRNA','RefSeq_mRNA_predicted', 'RefSeq_ncRNA', 'RefSeq_ncRNA_predicted' ],
-         );
-
-  return $default_method, \%override_method_for_source;
-}
-
-# transcript, gene display_xrefs can use defaults
-# since anopheles_symbol is "before" Uniprot
-
-# If there is an Anopheles_symbol xref, use its description
-sub gene_description_sources {
-
-  return ("Anopheles_symbol",
-	  "Uniprot/SWISSPROT",
-	  "RefSeq_peptide",
-	  "RefSeq_dna",
-	  "Uniprot/SPTREMBL",
-	  #"RefSeq_peptide_predicted",
-	  #"RefSeq_dna_predicted",
-	  #"EntrezGene");
-          );
-}
-
-sub transcript_display_xref_sources {
-
-  my @list = qw(RFAM
-		miRBase
-		Uniprot/SWISSPROT
-		Uniprot/Varsplic
-		Uniprot/SPTREMBL);
-
-  my %ignore;
-
-    $ignore{"Uniprot/SPTREMBL"} =(<<BIGN);
-SELECT object_xref_id
-    FROM object_xref JOIN xref USING(xref_id) JOIN source USING(source_id)
-     WHERE ox_status = 'DUMP_OUT' AND name = 'Uniprot/SPTREMBL' 
-      AND priority_description = 'protein_evidence_gt_2'
-BIGN
-
-  return [\@list,\%ignore];
-
-}
-
-# regexps to match any descriptons we want to filter out
-sub gene_description_filter_regexps {
-
-  return ();
-
-}
-
-1;