Commit adf5748a authored by Ian Longden's avatar Ian Longden
Browse files

update staging databases etc

parent 3b363ab2
......@@ -493,7 +493,7 @@ priority = 1
prio_descr =
parser = CCDSParser
release_uri =
data_uri = script:host=>ens-livemirror,dbname=>ccds_human_GRCh37_take2,tran_name=>ENST,
data_uri = script:host=>ens-livemirror,dbname=>ccds_human,tran_name=>ENST,
[source CCDS::mus_musculus]
# Used by mus_musculus
......@@ -1003,7 +1003,7 @@ priority = 1
prio_descr = main
parser = GOSlimParser
release_uri =
data_uri = script:host=>ens-staging,dbname=>ensembl_ontology_56,
data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_57,
[source GO::homo_sapiens]
......@@ -1087,7 +1087,7 @@ priority = 2
prio_descr = ccds
parser = HGNC_CCDSParser
release_uri =
data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,dbname=>ba1_human_cdsonly_20may09,host=>genebuild7,
data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,dbname=>ccds_human,host=>ens-livemirror,
[source HGNC::homo_sapiens#07]
......@@ -1121,7 +1121,7 @@ priority = 4
prio_descr = havana
parser = HGNC_ENSTParser
release_uri =
data_uri = script:host=>ens-staging,port=>3306,dbname=>homo_sapiens_vega_56_37a,
data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega_57_37b,
......@@ -1414,7 +1414,7 @@ priority = 1
prio_descr = vega
parser = MGI_Vega_Parser
release_uri =
data_uri = script:host=>ens-staging,port=>3306,dbname=>mus_musculus_vega_56_37i,
data_uri = script:host=>ens-staging2,port=>3306,dbname=>mus_musculus_vega_57_37j,
[source MGI::mus_musculus#03]
# Used by mus_musculus
......@@ -1623,7 +1623,7 @@ priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
release_uri =
data_uri = script:host=>genebuild7,dbname=>ba1_cdstrack_20may09,
data_uri = script:host=>ens-livemirror,dbname=>ccds_human,
[source RefSeq_dna::homo_sapiens#01]
# Used by homo_sapiens
......@@ -1656,7 +1656,7 @@ priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
release_uri =
data_uri = script:host=>genebuild7,dbname=>ba1_cdstrack_20may09,
data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse,
[source RefSeq_dna::pan_troglodytes]
......@@ -2319,7 +2319,7 @@ priority = 1
prio_descr =
parser = HGNC_curated_transcriptParser
release_uri =
data_uri = script:host=>ens-staging,port=>3306,dbname=>homo_sapiens_vega_56_37a,
data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega_57_37b,
[source HGNC_automatic_transcript::homo_sapiens]
......@@ -2357,7 +2357,7 @@ priority = 1
prio_descr =
parser = MGI_curated_transcriptParser
release_uri =
data_uri = script:host=>ens-staging,port=>3306,dbname=>mus_musculus_vega_56_37i,
data_uri = script:host=>ens-staging2,port=>3306,dbname=>mus_musculus_vega_57_37j,
[source MGI_curated_gene::mus_musculus]
name = MGI_curated_gene
......@@ -3623,8 +3623,6 @@ source = ncRNA::MULTI
[species rattus_norvegicus]
taxonomy_id = 10116
aliases = rat, rattusnorvegicus, rnovegicus
#source = AgilentProbe::rattus_norvegicus # now dealt with by functional genomics team
#source = Codelink::rattus_norvegicus # now dealt with by functional genomics team
source = EntrezGene::MULTI
source = GO::rattus_norvegicus
source = goslim_goa::MULTI
......@@ -3637,8 +3635,7 @@ source = RefSeq_peptide::rattus_norvegicus
source = UniGene::rattus_norvegicus
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
#source = Uniprot/Varsplic::MULTI # not included anymore as users found it confusing
#source = ncRNA::MULTI # copied in separately after running Xrefs
source = ncRNA::MULTI
[species saccharomyces_cerevisiae]
......
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