Renamed to RegulatoryFactor.pm

modules/Bio/EnsEMBL/RegulatoryMotif.pm

-use strict;
-
-package Bio::EnsEMBL::RegulatoryMotif;
-
-use Bio::EnsEMBL::Storable;
-use Bio::EnsEMBL::Utils::Argument qw(rearrange);
-
-use vars qw(@ISA);
-@ISA = qw(Bio::EnsEMBL::Storable);
-
-
-=head2 new
-
-  Arg [NAME] : string (optional)
-               The name of this regulatory motif
-  Arg [TYPE]: string (optional)
-               The type of repeat consensus
-  Arg [...]: Named arguments to superclass constructor
-             (see Bio::EnsEMBL::Storable)
-  Example    : $rc = Bio::EnsEMBL::RegulatoryMotif->new
-                       (-NAME    => 'SomeMotifName'
-                        -TYPE    => 'promoter',
-                        -DBID    => 1023,
-                        -ADAPTOR => $rc_adaptor);
-  Description: Creates a new Bio::EnsEMBL::RegulatoryMotif object
-  Returntype : Bio::EnsEMBL::RegulatoryMotif
-  Exceptions : none
-  Caller     : RegulatoryMotif
-
-=cut
-
-sub new {
-  my $caller = shift;
-
-  my $class = ref($caller) || $caller;
-
-  my $self = $class->SUPER::new(@_);
-
-  my ($name, $type ) =
-    rearrange(['NAME', 'TYPE'], @_);
-
-  $self->{'name'} = $name;
-  $self->{'type'} = $type;
-
-  return $self;
-}
-
-
-sub new_fast {
-  my $class = shift;
-  my $hashref = shift;
-  return bless $hashref, $class;
-}
-
-
-=head2 name
-
-  Arg [1]    : string $name (optional)
-  Example    : $name = $regulatory_motif->name()
-  Description: Getter/Setter for the name of this regulatory motif
-  Returntype : string
-  Exceptions : none
-  Caller     : general
-
-=cut
-
-sub name {
-  my $self = shift;
-  $self->{'name'} = shift if(@_);
-  return $self->{'name'};
-}
-
-
-=head2 type
-
-  Arg [1]    : string $type
-  Example    : $type = $regulatory_motif->type()
-  Description: Getter/Setter for the length of this regulatory motif
-  Returntype : int
-  Exceptions : none
-  Caller     : general
-
-=cut
-
-sub type {
-  my $self = shift;
-  $self->{'type'} = shift if(@_);
-  return $self->{'type'};
-}
-
-1;
-
-__END__
-
-=head1 NAME - Bio::EnsEMBL::RegulatoryMotif
-
-=head1 DESCRIPTION
-
-This object represents an entry in the
-regulatory_motif table.
-
-=head1 AUTHOR
-
-Glenn Proctor< email> glenn@ebi.ac.uk
-