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ensembl-gh-mirror
ensembl
Commits
af49c477
Commit
af49c477
authored
13 years ago
by
Laurent Gil
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Fixed bug with the character ` in the input file
parent
27304384
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1 changed file
misc-scripts/sql2html.pl
+71
-84
71 additions, 84 deletions
misc-scripts/sql2html.pl
with
71 additions
and
84 deletions
misc-scripts/sql2html.pl
+
71
−
84
View file @
af49c477
...
@@ -190,7 +190,6 @@ my @header_names = ('default');
...
@@ -190,7 +190,6 @@ my @header_names = ('default');
my
@colours
=
(
$default_colour
);
my
@colours
=
(
$default_colour
);
my
%legend
;
my
%legend
;
my
$in_doc
=
0
;
my
$in_doc
=
0
;
my
$in_table
=
0
;
my
$in_table
=
0
;
my
$header
=
'
default
';
my
$header
=
'
default
';
...
@@ -204,6 +203,7 @@ my $display = 'Show';
...
@@ -204,6 +203,7 @@ my $display = 'Show';
my
$parenth_count
=
0
;
my
$parenth_count
=
0
;
my
$header_colour
;
my
$header_colour
;
#############
#############
## Parser ##
## Parser ##
#############
#############
...
@@ -216,20 +216,19 @@ while (<SQLFILE>) {
...
@@ -216,20 +216,19 @@ while (<SQLFILE>) {
# Verifications
# Verifications
if
(
$_
=~
/^\/\*\*/
)
{
$in_doc
=
1
;
next
;
}
# start of a table documentation
if
(
$_
=~
/^\/\*\*/
)
{
$in_doc
=
1
;
next
;
}
# start of a table documentation
if
(
$_
=~
/^\s*create\s+table\s+(if\s+not\s+exists\s+)?(\w+)/i
)
{
# start to parse the content of the table
if
(
$_
=~
/^\s*create\s+table\s+(if\s+not\s+exists\s+)?`?(\w+)`?/i
)
{
# start to parse the content of the table
my
$sql_t_name
=
remove_char
(
$
2
);
if
(
$table
eq
$
2
)
{
if
(
$sql_t_name
eq
$table
)
{
$in_table
=
1
;
$in_table
=
1
;
$parenth_count
++
;
$parenth_count
++
;
}
}
else
{
else
{
print
STDERR
"
The documentation of the table
$
sql_t_name
has not be found!
\n
";
print
STDERR
"
The documentation of the table $
2
has not be found!
\n
";
}
}
next
;
next
;
}
}
next
if
(
$in_doc
==
0
and
$in_table
==
0
);
next
if
(
$in_doc
==
0
and
$in_table
==
0
);
my
$doc
=
$_
;
my
$doc
=
remove_char
(
$_
)
;
## Parsing of the documentation ##
## Parsing of the documentation ##
if
(
$in_doc
==
1
)
{
if
(
$in_doc
==
1
)
{
...
@@ -284,30 +283,24 @@ while (<SQLFILE>) {
...
@@ -284,30 +283,24 @@ while (<SQLFILE>) {
}
}
}
}
## Parsing of the SQL table to fetch the columns types ##
## Parsing of the SQL table to fetch the columns types ##
elsif
(
$in_table
==
1
)
{
elsif
(
$in_table
==
1
)
{
#END OF TABLE DEFINITION
#
END OF TABLE DEFINITION
#Can't do this easily with a simply regex as there are varying valid formats
#
Can't do this easily with a simply regex as there are varying valid formats
#The end of the table definition is actually defined by 2nd enclosing bracket
#
The end of the table definition is actually defined by 2nd enclosing bracket
#Regex counting VOODOO!
#
Regex counting VOODOO!
#This basically puts the regex in a list context
#
This basically puts the regex in a list context
#before inc/dec'ing with it in a scalar context.
#
before inc/dec'ing with it in a scalar context.
$parenth_count
+=
()
=
$doc
=~
/\(/gi
;
$parenth_count
+=
()
=
$doc
=~
/\(/gi
;
$parenth_count
-=
()
=
$doc
=~
/\)/gi
;
$parenth_count
-=
()
=
$doc
=~
/\)/gi
;
# warn "parenth count is $parenth_count";
if
(
$parenth_count
==
0
)
{
# End of the sql table definition
if
(
$parenth_count
==
0
)
{
# End of the sql table definition
if
(
scalar
@
{
$documentation
->
{
$header
}{'
tables
'}{
$table
}{
column
}}
>
$count_sql_col
)
{
if
(
scalar
@
{
$documentation
->
{
$header
}{'
tables
'}{
$table
}{
column
}}
>
$count_sql_col
)
{
print
STDERR
"
Description of a non existant column in the table
$table
!
\n
";
#use Data::Dumper;
#warn "col count $count_sql_col";
#warn Data::Dumper::Dumper(\$documentation);
print
STDERR
"
Description of a non existant column in the table
$table
!
\n
";
}
}
$in_table
=
0
;
$in_table
=
0
;
...
@@ -317,73 +310,69 @@ while (<SQLFILE>) {
...
@@ -317,73 +310,69 @@ while (<SQLFILE>) {
}
}
else
{
else
{
# warn "Processing table";
## INDEXES ##
if
(
$doc
=~
/^\s*(primary\s+key)\s*\((.+)\)/i
or
$doc
=~
/^\s*(unique)\s*\((.+)\)/i
){
# Primary or unique;
## INDEXES ##
add_column_index
(
$
1
,
$
2
);
if
(
$doc
=~
/^\s*(primary\s+key)\s*\((.+)\)/i
or
$doc
=~
/^\s*(unique)\s*\((.+)\)/i
){
# Primary or unique
next
;
my
$icol
=
remove_char
(
$
2
);
}
add_column_index
(
$
1
,
$icol
);
elsif
(
$doc
=~
/^\s*(unique\s+)?(key|index)\s+(\S+)\s*\((.+)\)/i
)
{
# Keys and indexes
next
;
add_column_index
("
$1$2
",
$
4
,
$
3
);
}
next
;
elsif
(
$doc
=~
/^\s*(unique\s+)?(key|index)\s+(\S+)\s*\((.+)\)/i
)
{
# Keys and indexes
}
my
$icol
=
remove_char
(
$
4
);
elsif
(
$doc
=~
/^\s*(key)\s+\((.+)\)/i
)
{
# Keys
add_column_index
("
$1$2
",
$icol
,
$
3
);
add_column_index
("
$1
",
$
2
,'');
next
;
next
;
}
}
elsif
(
$doc
=~
/^\s*(key)\s+\((.+)\)/i
)
{
# Keys
my
$icol
=
remove_char
(
$
2
);
add_column_index
("
$1
",
$icol
,'');
next
;
}
## TYPES & DEFAULT VALUES ##
my
$col_name
=
'';
my
$col_type
=
'';
my
$col_def
=
'';
## TYPES & DEFAULT VALUES ##
my
$col_name
=
'';
my
$col_type
=
'';
my
$col_def
=
'';
# All the type is contained in the same line (type followed by parenthesis)
# All the type is contained in the same line (type followed by parenthesis)
if
(
$doc
=~
/^\W*(\w+)\W+(\w+\s?\(.*\))/
){
if
(
$doc
=~
/^\W*(\w+)\W+(\w+\s?\(.*\))/
){
$col_name
=
remove_char
(
$
1
)
;
$col_name
=
$
1
;
$col_type
=
$
2
;
$col_type
=
$
2
;
if
(
$doc
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;
}
# Default value
if
(
$doc
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;
}
# Default value
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
}
}
# The type is written in several lines
# The type is written in several lines
elsif
(
$doc
=~
/^\W*(\w+)\W+(enum|set)(\s?\(.*)/i
){
# The content is split in several lines
elsif
(
$doc
=~
/^\W*(\w+)\W+(enum|set)(\s?\(.*)/i
){
# The content is split in several lines
$col_name
=
remove_char
(
$
1
);
$col_name
=
$
1
;
$col_type
=
"
$2$3<br />
";
$col_type
=
"
$2$3<br />
";
my
$end_type
=
0
;
my
$end_type
=
0
;
while
(
$end_type
!=
1
){
while
(
$end_type
!=
1
){
my
$line
=
<
SQLFILE
>
;
my
$line
=
<
SQLFILE
>
;
chomp
$line
;
chomp
$line
;
$line
=
remove_char
(
$line
);
#Regex counting VOODOO again
$parenth_count
+=
()
=
$line
=~
/\(/gi
;
# Regex counting VOODOO again
$parenth_count
-=
()
=
$line
=~
/\)/gi
;
$parenth_count
+=
()
=
$line
=~
/\(/gi
;
$parenth_count
-=
()
=
$line
=~
/\)/gi
;
if
(
$line
=~
/\)/
)
{
# Close parenthesis
if
(
$line
=~
/\)/
)
{
# Close parenthesis
$end_type
=
1
;
$end_type
=
1
;
$line
=~
/^\s*(.+)\)/
;
$line
=~
/^\s*(.+)\)/
;
$col_type
.=
"
$1)
";
$col_type
.=
"
$1)
";
}
}
else
{
# Add the content of the line
else
{
# Add the content of the line
$line
=~
/^\s*(.+)/
;
$line
=~
/^\s*(.+)/
;
$col_type
.=
$
1
.
'
<br />
';
$col_type
.=
$
1
.
'
<br />
';
}
if
(
$line
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;
}
# Default value
}
}
if
(
$line
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;
}
# Default value
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
}
}
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
}
# All the type is contained in the same line (type without parenthesis)
# All the type is contained in the same line (type without parenthesis)
elsif
(
$doc
=~
/^\s*\W*(\w+)\W+(\w+)/
){
elsif
(
$doc
=~
/^\s*\W*(\w+)\W+(\w+)/
){
$col_name
=
remove_char
(
$
1
)
;
$col_name
=
$
1
;
$col_type
=
$
2
;
$col_type
=
$
2
;
if
(
$doc
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;}
# Default value
if
(
$doc
=~
/default\s*([^,\s]+)\s*.*(,|#).*/i
)
{
$col_def
=
$
1
;}
# Default value
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
add_column_type_and_default_value
(
$col_name
,
$col_type
,
$col_def
);
}
}
}
}
}
}
}
}
...
@@ -691,7 +680,6 @@ sub add_columns {
...
@@ -691,7 +680,6 @@ sub add_columns {
my
$table_to_link
=
qq{<a href="#$link">$link</a>}
;
my
$table_to_link
=
qq{<a href="#$link">$link</a>}
;
$desc
=~
s/\@link\s?\w+/$table_to_link/
;
$desc
=~
s/\@link\s?\w+/$table_to_link/
;
#$col =~ /^\s*(\w+)[\s\t]+(.+)\t+(.+)\t(.*)/;
$html
.=
qq{ <tr class="bg$bg"><td><b>$name</b></td><td>$type</td><td>$default</td><td>$desc</td><td>$index</td></tr>\n}
;
$html
.=
qq{ <tr class="bg$bg"><td><b>$name</b></td><td>$type</td><td>$default</td><td>$desc</td><td>$index</td></tr>\n}
;
if
(
$bg
==
1
)
{
$bg
=
2
;
}
if
(
$bg
==
1
)
{
$bg
=
2
;
}
else
{
$bg
=
1
;
}
else
{
$bg
=
1
;
}
...
@@ -723,7 +711,6 @@ sub add_column_index {
...
@@ -723,7 +711,6 @@ sub add_column_index {
my
$idx_name
=
shift
;
my
$idx_name
=
shift
;
my
$index
=
$idx_type
;
my
$index
=
$idx_type
;
$idx_name
=
remove_char
(
$idx_name
);
if
(
defined
(
$idx_name
))
{
if
(
defined
(
$idx_name
))
{
$index
.=
"
:
$idx_name
";
$index
.=
"
:
$idx_name
";
}
}
...
@@ -733,7 +720,6 @@ sub add_column_index {
...
@@ -733,7 +720,6 @@ sub add_column_index {
my
%is_found
=
();
my
%is_found
=
();
foreach
my
$i_col
(
@idx_cols
)
{
foreach
my
$i_col
(
@idx_cols
)
{
$i_col
=~
s/\s//g
;
# Remove white spaces
$i_col
=~
s/\s//g
;
# Remove white spaces
$i_col
=
remove_char
(
$i_col
);
# Remove the ` character
# In case of index using a number characters for a column
# In case of index using a number characters for a column
if
(
$i_col
=~
/(.+)\(\d+\)/
)
{
if
(
$i_col
=~
/(.+)\(\d+\)/
)
{
$i_col
=
$
1
;
$i_col
=
$
1
;
...
@@ -805,6 +791,7 @@ sub add_legend {
...
@@ -805,6 +791,7 @@ sub add_legend {
}
}
# Removed the character(s) ` from the read line.
sub
remove_char
{
sub
remove_char
{
my
$text
=
shift
;
my
$text
=
shift
;
$text
=~
s/`//g
;
$text
=~
s/`//g
;
...
...
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