Merge pull request #246 from tgrego/seq_ont_mapper_deprecation
SequenceOntologyMapper deprecation
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- DEPRECATED.md 9 additions, 0 deletionsDEPRECATED.md
- modules/Bio/EnsEMBL/CDS.pm 1 addition, 0 deletionsmodules/Bio/EnsEMBL/CDS.pm
- modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm 1 addition, 1 deletionmodules/Bio/EnsEMBL/DnaDnaAlignFeature.pm
- modules/Bio/EnsEMBL/DnaPepAlignFeature.pm 1 addition, 2 deletionsmodules/Bio/EnsEMBL/DnaPepAlignFeature.pm
- modules/Bio/EnsEMBL/Exon.pm 3 additions, 0 deletionsmodules/Bio/EnsEMBL/Exon.pm
- modules/Bio/EnsEMBL/Feature.pm 28 additions, 0 deletionsmodules/Bio/EnsEMBL/Feature.pm
- modules/Bio/EnsEMBL/Gene.pm 1 addition, 0 deletionsmodules/Bio/EnsEMBL/Gene.pm
- modules/Bio/EnsEMBL/KaryotypeBand.pm 2 additions, 0 deletionsmodules/Bio/EnsEMBL/KaryotypeBand.pm
- modules/Bio/EnsEMBL/MiscFeature.pm 3 additions, 0 deletionsmodules/Bio/EnsEMBL/MiscFeature.pm
- modules/Bio/EnsEMBL/RepeatFeature.pm 2 additions, 0 deletionsmodules/Bio/EnsEMBL/RepeatFeature.pm
- modules/Bio/EnsEMBL/SimpleFeature.pm 2 additions, 0 deletionsmodules/Bio/EnsEMBL/SimpleFeature.pm
- modules/Bio/EnsEMBL/Slice.pm 23 additions, 0 deletionsmodules/Bio/EnsEMBL/Slice.pm
- modules/Bio/EnsEMBL/Transcript.pm 1 addition, 3 deletionsmodules/Bio/EnsEMBL/Transcript.pm
- modules/Bio/EnsEMBL/UTR.pm 22 additions, 0 deletionsmodules/Bio/EnsEMBL/UTR.pm
- modules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm 17 additions, 6 deletionsmodules/Bio/EnsEMBL/Utils/IO/GFFSerializer.pm
- modules/Bio/EnsEMBL/Utils/SequenceOntologyMapper.pm 29 additions, 0 deletionsmodules/Bio/EnsEMBL/Utils/SequenceOntologyMapper.pm
- modules/t/cds.t 1 addition, 0 deletionsmodules/t/cds.t
- modules/t/dnaDnaAlignFeature.t 1 addition, 0 deletionsmodules/t/dnaDnaAlignFeature.t
- modules/t/dnaPepAlignFeature.t 1 addition, 0 deletionsmodules/t/dnaPepAlignFeature.t
- modules/t/exon.t 2 additions, 0 deletionsmodules/t/exon.t
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