schema for xref mindmap db

misc-scripts/xref_mapping/xref_mindmap/sql/tables.sql

+CREATE TABLE external_db_type (
+  external_db_id	INTEGER UNSIGNED NOT NULL AUTO_INCREMENT,
+  db_name       	VARCHAR(100) NOT NULL,
+  db_display_name	VARCHAR(255),
+  db_type_id		INTEGER UNSIGNED,
+
+  PRIMARY KEY (external_db_id),
+  KEY type_idx (db_type_id, db_name)
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+
+CREATE TABLE object_xref_linkage (
+ external_db_id   	  INTEGER UNSIGNED NOT NULL,
+ ensembl_object_type	  VARCHAR(100),
+ link_type_id	  	  INTEGER UNSIGNED NOT NULL,
+ linked_external_db_id    INTEGER UNSIGNED,
+ linked_node_text	  VARCHAR(255),
+
+ KEY xref_origin_idx (external_db_id, ensembl_object_type)
+
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+CREATE TABLE object_external_db_node (
+ ensembl_object_type      VARCHAR(100) NOT NULL,
+ external_db_id		  INTEGER UNSIGNED NOT NULL,
+ mindmap_tag_id		  VARCHAR(100) NOT NULL,
+
+ UNIQUE KEY (ensembl_object_type, external_db_id)
+
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+
+CREATE TABLE db_type (
+  db_type_id    INTEGER UNSIGNED NOT NULL AUTO_INCREMENT,
+  db_type	VARCHAR(255) NOT NULL,
+
+  PRIMARY KEY (db_type_id)
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+CREATE TABLE link_type (
+  link_type_id	       INTEGER UNSIGNED NOT NULL AUTO_INCREMENT,
+  link_type	       VARCHAR(100) NOT NULL,
+  link_description     VARCHAR(255) NOT NULL,
+
+  PRIMARY KEY (link_type_id),
+  KEY link_type_idx (link_type)
+
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+CREATE TABLE object_distance (
+  from_object	       VARCHAR(100) NOT NULL,
+  to_object	       VARCHAR(100) NOT NULL,
+  distance	       TINYINT(1) UNSIGNED NOT NULL,
+
+  KEY (from_object,distance)
+
+) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
+LOCK TABLES `object_distance` WRITE;
+INSERT INTO `object_distance` VALUES ('Gene','Gene',0), ('Gene','Transcript',1), ('Gene', 'Translation', 2), ('Transcript','Gene',1), ('Transcript','Transcript',0), ('Transcript', 'Translation', 1), ('Translation', 'Gene', 2), ('Translation', 'Transcript',1), ('Translation', 'Translation',0);
+UNLOCK TABLES;
+
+LOCK TABLES `db_type` WRITE;
+INSERT INTO `db_type` VALUES (1,'disease related'),(2,'expression'),(3,'integrated information'),(4,'naming'),(5,'products'),(6,'sequence/annotation'),(7,'classification'),(8,'function/location'),(9,'structure'),(10,'other resources');
+UNLOCK TABLES;
+
+LOCK TABLES `link_type` WRITE;
+INSERT INTO `link_type` VALUES (1,'DIRECT', 'DIRECT'),(2,'INFERRED PAIR', 'INFERRED_PAIR'),(3,'DEPENDENT', 'DEPENDENT ON'),(4,'SEQUENCE_MATCH', 'SEQUENCE MATCH'),(5,'COORDINATE_OVERLAP', 'COORDINATE OVERLAP'),(6,'GENERATED_FROM', 'GENERATED FROM'),(7,'PROJECTION','PROJECTION'),(8,'PROTEIN_FEATURES', 'VIA PROTEIN FEATURES');
+UNLOCK TABLES;
+
+
+