Use latest exonerate.

misc-scripts/id_mapping/default.conf

@@ -40,7 +40,7 @@ targetdbname                = sf7_patch_pa_62
 build_cache_auto_threshold  = 2000
 build_cache_concurrent_jobs = 25
 
-;; limit
+;; limit on biotypes
 ;biotypes=protein_coding,pseudogene,retrotransposed
 
 ;; LSF parameters
@@ -53,12 +53,13 @@ gene_score_threshold        = 0.125
 
 ;; Exonerate
 min_exon_length             = 15
-exonerate_path              = /usr/local/ensembl/bin/exonerate-0.8.2
+exonerate_path              = /software/ensembl/exonerate-2.2.0/bin/exonerate
 exonerate_bytes_per_job     = 250000
 exonerate_concurrent_jobs   = 200
 exonerate_threshold         = 0.5
 exonerate_extra_params      = '--bestn 100'
-lsf_opt_exonerate           = "-We 5"
+lsf_opt_exonerate           = "-We 10 -M1200000 -R'select[linux && lustre && mem>1200],rusage[mem=1200]'"
+
 synteny_rescore_jobs        = 20
 lsf_opt_synteny_rescore     = "-We 10 -M10000000 -R'select[linux && lustre && mem>10000],rusage[mem=10000]'"