Commit b955105f authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
Browse files

Use latest exonerate.

parent 507e3329
......@@ -40,7 +40,7 @@ targetdbname = sf7_patch_pa_62
build_cache_auto_threshold = 2000
build_cache_concurrent_jobs = 25
;; limit
;; limit on biotypes
;biotypes=protein_coding,pseudogene,retrotransposed
;; LSF parameters
......@@ -53,12 +53,13 @@ gene_score_threshold = 0.125
;; Exonerate
min_exon_length = 15
exonerate_path = /usr/local/ensembl/bin/exonerate-0.8.2
exonerate_path = /software/ensembl/exonerate-2.2.0/bin/exonerate
exonerate_bytes_per_job = 250000
exonerate_concurrent_jobs = 200
exonerate_threshold = 0.5
exonerate_extra_params = '--bestn 100'
lsf_opt_exonerate = "-We 5"
lsf_opt_exonerate = "-We 10 -M1200000 -R'select[linux && lustre && mem>1200],rusage[mem=1200]'"
synteny_rescore_jobs = 20
lsf_opt_synteny_rescore = "-We 10 -M10000000 -R'select[linux && lustre && mem>10000],rusage[mem=10000]'"
......
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