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ensembl-gh-mirror
ensembl
Commits
bb8ebce0
Commit
bb8ebce0
authored
22 years ago
by
juguang
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bug fixed during trying to store the converted object into db
parent
5360255d
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2 changed files
modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm
+3
-0
3 additions, 0 deletions
modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm
modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm
+5
-5
5 additions, 5 deletions
...les/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm
with
8 additions
and
5 deletions
modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm
+
3
−
0
View file @
bb8ebce0
...
...
@@ -77,6 +77,9 @@ sub _initialize {
sub
_attach_supporting_feature
{
my
(
$self
,
$exon
,
$ens_exon
)
=
@_
;
unless
(
$exon
->
has_tag
('
supporting_feature
')){
return
;
}
my
(
$sf
)
=
$exon
->
each_tag_value
('
supporting_feature
');
unless
(
defined
$sf
){
$self
->
warn
("
no supporting feature is attached in exon
");
...
...
This diff is collapsed.
Click to expand it.
modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm
+
5
−
5
View file @
bb8ebce0
...
...
@@ -53,14 +53,14 @@ use Bio::EnsEMBL::Utils::Converter::bio_ens;
sub
_initialize
{
my
(
$self
,
@args
)
=
@_
;
$self
->
SUPER::
_initialize
(
@args
);
$self
->
{
_predictionExonConverter
}
=
new
Bio::EnsEMBL::Utils::
Converter
(
-
in
=>
'
Bio::
Tools::Prediction
::Exon
',
-
in
=>
'
Bio::
SeqFeature::Gene
::Exon
',
-
out
=>
'
Bio::EnsEMBL::Exon
',
-
contig
=>
$self
->
contig
);
$self
->
SUPER::
_initialize
(
@args
);
$self
->
{
_predictionExonConverter
}
->
contig
(
$self
->
contig
);
$self
->
{
_predictionExonConverter
}
->
analysis
(
$self
->
analysis
);
}
sub
_convert_single
{
...
...
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