overwrite the display_xrefs behaviour for this species

misc-scripts/xref_mapping/XrefMapper/leishmania_major.pm

+package XrefMapper::leishmania_major;
+
+use  XrefMapper::BasicMapper;
+
+use vars qw(@ISA);
+
+@ISA = qw(XrefMapper::BasicMapper);
+
+
+sub get_set_lists {
+
+  return [["ExonerateGappedBest1", ["leishmania_major","*"]]];
+
+}
+
+
+sub transcript_display_xref_sources {
+    my $self     = shift;
+    my $fullmode = shift;
+
+    my @list = qw(
+                 Uniprot_genename
+               );
+    
+    my %ignore;
+    
+    
+    # Both methods
+    
+    if(!$fullmode){
+	$ignore{"EntrezGene"}= 'FROM:RefSeq_[pd][en][pa].*_predicted';
+    }
+    else{
+	$ignore{"EntrezGene"} = 'select ox.object_xref_id from object_xref ox, dependent_xref dx, source s1, xref x1, source s2, xref x2 where ox.object_xref_id = dx.object_xref_id and dx.dependent_xref_id = x1.xref_id and x1.source_id = s1.source_id and s1.name = "EntrezGene" and x2.xref_id = dx.master_xref_id and x2.source_id = s2.source_id and (s2.name like "Refseq_dna_predicted" or s2.name like "RefSeq_peptide_predicted") and ox.ox_status = "DUMP_OUT"';
+	
+    }
+    
+    return [\@list,\%ignore];
+}
+
+
+1;

misc-scripts/xref_mapping/XrefMapper/pythium_ultimum.pm

+package XrefMapper::pythium_ultimum;
+
+use  XrefMapper::BasicMapper;
+
+use vars qw(@ISA);
+
+@ISA = qw(XrefMapper::BasicMapper);
+
+
+sub get_set_lists {
+
+  return [["ExonerateGappedBest1", ["pythium_ultimum","*"]]];
+
+}
+
+
+sub transcript_display_xref_sources {
+    my $self     = shift;
+    my $fullmode = shift;
+
+    my @list = qw(
+                 Uniprot_genename
+               );
+    
+    my %ignore;
+    
+    
+    # Both methods
+    
+    if(!$fullmode){
+	$ignore{"EntrezGene"}= 'FROM:RefSeq_[pd][en][pa].*_predicted';
+    }
+    else{
+	$ignore{"EntrezGene"} = 'select ox.object_xref_id from object_xref ox, dependent_xref dx, source s1, xref x1, source s2, xref x2 where ox.object_xref_id = dx.object_xref_id and dx.dependent_xref_id = x1.xref_id and x1.source_id = s1.source_id and s1.name = "EntrezGene" and x2.xref_id = dx.master_xref_id and x2.source_id = s2.source_id and (s2.name like "Refseq_dna_predicted" or s2.name like "RefSeq_peptide_predicted") and ox.ox_status = "DUMP_OUT"';
+	
+    }
+    
+    return [\@list,\%ignore];
+}
+
+
+1;