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Commit bc629ed3 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
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Fixed POD:

  Wrong method name in POD heading for
  fetch_all_by_Slice_and_external_dbname_link().

  Make POD lines slightly shorter for same method.
parent 3c2ff074
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......@@ -356,24 +356,25 @@ sub fetch_all_by_domain {
=head2 fetch_all_by_Slice
=head2 fetch_all_by_Slice_and_external_dbname_link
Arg [1] : Bio::EnsEMBL::Slice $slice
The slice to fetch genes on.
Arg [2] : (optional) string $logic_name
the logic name of the type of features to obtain
Arg [3] : (optional) boolean $load_transcripts
if true, transcripts will be loaded immediately rather than
lazy loaded later.
if true, transcripts will be loaded immediately
rather than lazy loaded later.
Arg [4] : Name of the external database
Example : @genes = @{$ga->fetch_all_by_Slice_and_external_dbname_link
($slice,undef,undef,"HUGO")};
Description: Overrides superclass method to optionally load transcripts
immediately rather than lazy-loading them later. This
is more efficient when there are a lot of genes whose
transcripts are going to be used. The genes are then filtered
to return only those with external database links of the type specified
Example : @genes = @{
$ga->fetch_all_by_Slice_and_external_dbname_link(
$slice, undef, undef, "HUGO" ) };
Description: Overrides superclass method to optionally load
transcripts immediately rather than lazy-loading them
later. This is more efficient when there are a lot
of genes whose transcripts are going to be used. The
genes are then filtered to return only those with
external database links of the type specified
Returntype : reference to list of genes
Exceptions : thrown if exon cannot be placed on transcript slice
Caller :
......@@ -381,7 +382,6 @@ sub fetch_all_by_domain {
=cut
sub fetch_all_by_Slice_and_external_dbname_link {
my $self = shift;
my $slice = shift;
......
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