Use UniprotAltParser.pm instead of UniprotParser.pm to fix uniprot_genename problem

misc-scripts/xref_mapping/xref_config.ini

@@ -2337,33 +2337,33 @@ data_uri        = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/S
 data_uri        = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/Str.data.gz
 
 [source UniProt::protein_id-predicted]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = protein_id_predicted
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source UniProt::protein_id]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = protein_id
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source UniProt::PDB]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = PDB
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source Uniprot/SPTREMBL::MULTI]
@@ -2373,18 +2373,18 @@ download        = Y
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz
 
 [source Uniprot/SPTREMBL::MULTI-predicted]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = Uniprot/SPTREMBL_predicted
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source Uniprot/SWISSPROT::MULTI]
@@ -2394,7 +2394,7 @@ download        = Y
 order           = 20
 priority        = 2
 prio_descr      = sequence_mapped
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz
 
@@ -2420,23 +2420,23 @@ data_uri        = ftp://ftp.ebi.ac.uk/pub/contrib/xrefs/ens-sp.map
 
 
 [source Uniprot/SWISSPROT::MULTI-predicted]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = Uniprot/SWISSPROT_predicted
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source Uniprot_genename]
-# Special source used in UniProtParser foir gene names..
+# Special source used in UniProtAltParser foir gene names..
 name            = Uniprot_genename
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 data_uri        = 
 
@@ -2474,23 +2474,23 @@ release_uri     = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldat
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz
 
 [source Uniprot::EMBL-predicted]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = EMBL_predicted
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source Uniprot::EMBL]
-# Special source used in UniProtParser.  No species uses this source.
+# Special source used in UniProtAltParser.  No species uses this source.
 name            = EMBL
 download        = N
 order           = 20
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtAltParser
 release_uri     =
 
 [source UniParc::MULTI]