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Commit c6412821 authored by Kieron Taylor's avatar Kieron Taylor :angry:
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Missing argument documented on ->transform

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modules/Bio/EnsEMBL/Feature.pm
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...@@ -491,6 +491,9 @@ sub equals { ...@@ -491,6 +491,9 @@ sub equals {
The coord system to transform this feature to. The coord system to transform this feature to.
Arg [2] : string $version (optional) Arg [2] : string $version (optional)
The version of the coord system to transform this feature to. The version of the coord system to transform this feature to.
Arg [3] : Bio::EnsEMBL::Slice (optional)
Specified when a projection may land on many overlapping slices
and disambiguation is required.
Example : $feature = $feature->transform('contig'); Example : $feature = $feature->transform('contig');
next if(!defined($feature)); next if(!defined($feature));
Description: Returns a copy of this feature, but converted to a different Description: Returns a copy of this feature, but converted to a different
...@@ -607,7 +610,7 @@ sub transform { ...@@ -607,7 +610,7 @@ sub transform {
my $slice = $proj->[2]; my $slice = $proj->[2];
warn "available slice ".$slice->seq_regon_name."\n"; warn "available slice ".$slice->seq_regon_name."\n";
} }
warn "MORE than one projection and none to slice specified (".$to_slice->seq_region_name.")\n"; warn "MORE than one projection and no to slice specified (".$to_slice->seq_region_name.")\n";
} }
} }
else { else {
......
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