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Commit c6e0275d authored by Glenn Proctor's avatar Glenn Proctor
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Moved RefSeq RNA parsing before protein parsing.

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misc-scripts/xref_mapping/table.sql
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......@@ -118,20 +118,6 @@ INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_dat
# --------------------------------------------------------------------------------
# RefSeq - release/ and cumulative/ directories, for protein and mRNA
# release/protein
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
# release/rna
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.rna.fna.gz', '', now(), now(), "RefSeqParser");
......@@ -148,6 +134,21 @@ INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_dat
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.rna.fna.gz', '', now(), now(), "RefSeqParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.rna.fna.gz', '', now(), now(), "RefSeqParser");
# release/protein
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.protein.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
# cumulative
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/cumulative/rscu.gpff.gz', '', now(), now(), "RefSeqGPFFParser");
INSERT INTO source_url (source_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2, 'ftp://ftp.ncbi.nih.gov/refseq/cumulative/rscu.fna.gz', '', now(), now(), "RefSeqParser");
......
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