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Commit c7905a58 authored by Monika Komorowska's avatar Monika Komorowska
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fixed a bug which applied incorrect accessions to clone based vega gene display xrefs

parent 1c76c838
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......@@ -557,19 +557,12 @@ sub set_transcript_and_gene_display_xref_via_clone_name{
my $g_source_id;
my $desc;
my $name;
if(defined($vega_clone_name) && !defined($ens_clone_names->{$gene_id})){
if(defined($vega_clone_name)){
$name = $vega_clone_name;
$t_source_id = $dbname_to_source_id->{"Clone_based_vega_transcript"};
$g_source_id = $dbname_to_source_id->{"Clone_based_vega_gene"};
$name = $vega_clone_name;
$desc = "via havana clone name";
my $num = 1;
my $unique_name = $name.".".$num;
while(defined($xref_added->{$unique_name.":".$g_source_id}) ){
$num++;
$unique_name = $name.".".$num;
}
$name = $unique_name;
}
if (!defined($vega_clone_name) ) {
if (defined($ens_clone_names->{$gene_id})) {
......
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