Merge from branch 19

modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm

@@ -84,6 +84,9 @@ sub fetch_all_by_Slice {
     }
 
     #create a snp object through a fast (hacky) constructor
+    my $STATUS = $arrayref->[6];
+    $STATUS =~s/-/ /;
+    $STATUS = $STATUS eq 'no info' ? 'suspected' : "proven $STATUS";
     my $snp = Bio::EnsEMBL::SNP->new_fast(
 		  { 'dbID'       => $arrayref->[0], 
 		   '_gsf_start'  => $arrayref->[1] - $slice_start + 1,
@@ -93,10 +96,12 @@ sub fetch_all_by_Slice {
 		    '_type'       => $arrayref->[4],
                     '_range_type' => $arrayref->[5],
                     '_validated'  => $arrayref->[6],
+                    'status'     => $STATUS,
                     'alleles'    => $arrayref->[7],
                     '_ambiguity_code' => $arrayref->[10],
                     '_snpclass'   => $arrayref->[8],
                     '_mapweight'  => $arrayref->[9],
+		    '_source' => $arrayref->[11],
 		    '_source_tag' => $arrayref->[11],
 		    'link'        => \@links });
     push @snps, $snp;