Commit d2d78819 authored by Glenn Proctor's avatar Glenn Proctor
Browse files

Use Latin name for species in "from ..." line instead of common name.

parent c816310a
......@@ -139,13 +139,15 @@ sub project_display_names {
my $to_source = $to_gene->display_xref()->dbname() if ($to_gene->display_xref());
my $from_source = $from_gene->display_xref()->dbname() if ($from_gene->display_xref());
my $from_latin_species = Bio::EnsEMBL::Registry->get_alias($from_species);
# if no display name set, do the projection
if (check_overwrite_display_xref($to_gene, $from_source, $to_source)) {
if ($dbEntry) {
# Modify the dbEntry to indicate it's not from this species - set info_type & info_text
my $txt = "from $from_species gene " . $from_gene->stable_id();
my $txt = "from $from_latin_species gene " . $from_gene->stable_id();
$dbEntry->info_type("PROJECTION");
$dbEntry->info_text($txt);
......@@ -212,6 +214,8 @@ sub project_go_terms {
my $from_translation = $ma->fetch_by_dbID($from_attribute->peptide_member_id())->get_Translation();
my $to_translation = $ma->fetch_by_dbID($to_attribute->peptide_member_id())->get_Translation();
my $from_latin_species = Bio::EnsEMBL::Registry->get_alias($from_species);
my $to_go_xrefs = $to_translation->get_all_DBEntries();
DBENTRY: foreach my $dbEntry (@{$from_translation->get_all_DBEntries()}) {
......@@ -233,7 +237,7 @@ sub project_go_terms {
#$dbEntry->flush_linkage_types();
$dbEntry->add_linkage_type("IEA");
my $txt = "from $from_species gene " . $from_translation->stable_id();
my $txt = "from $from_latin_species gene " . $from_translation->stable_id();
$dbEntry->info_type("PROJECTION");
$dbEntry->info_text($txt);
......
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