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ensembl-gh-mirror
ensembl
Commits
d43340ac
Commit
d43340ac
authored
16 years ago
by
Ian Longden
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OTTT seperated for human and mouse as these now query databases
parent
404aa82f
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1 changed file
misc-scripts/xref_mapping/xref_config.ini
+18
-7
18 additions, 7 deletions
misc-scripts/xref_mapping/xref_config.ini
with
18 additions
and
7 deletions
misc-scripts/xref_mapping/xref_config.ini
+
18
−
7
View file @
d43340ac
...
...
@@ -681,7 +681,7 @@ priority = 3
prio_descr
=
havana
parser
=
HGNC_ENSTParser
release_uri
=
data_uri
=
script:host=>ens
db-1-11
,port=>
5317
,dbname=>homo_sapiens_vega_
49_20080328
,
data_uri
=
script:host=>ens
-staging
,port=>
3306
,dbname=>homo_sapiens_vega_
51_36m
,
...
...
@@ -954,8 +954,19 @@ parser = MGDParser
release_uri
=
data_uri
=
taken from uniprot files
[source OTTT::MULTI]
# Used by homo_sapiens, mus_musculus
[source OTTT::homo_sapiens]
# Used by homo_sapiens
name
=
OTTT
download
=
Y
order
=
50
priority
=
1
prio_descr
=
parser
=
OTTTParser
release_uri
=
data_uri
=
script:host=>ens-staging,port=>3306,dbname=>homo_sapiens_vega_51_36m,
[source OTTT::mus_musculus]
# Used by mus_musculus
name
=
OTTT
download
=
Y
order
=
50
...
...
@@ -963,7 +974,7 @@ priority = 1
prio_descr
=
parser
=
OTTTParser
release_uri
=
data_uri
=
script:host=>ensdb-1-11,port=>5317,dbname=>
homo_sapiens_vega_49_20080328
,
data_uri
=
script:host=>ensdb-1-11,port=>5317,dbname=>
mus_musculus_vega_51_37d
,
[source RGD::rattus_norvegicus]
# Used by rattus_norvegicus
...
...
@@ -1742,7 +1753,7 @@ priority = 1
prio_descr
=
parser
=
HGNC_curated_transcriptParser
release_uri
=
data_uri = script:host=>ens
db-1-11
,port=>
5317
,dbname=>homo_sapiens_vega_
49_20080328
,
data_uri = script:host=>ens
-staging
,port=>
3306
,dbname=>homo_sapiens_vega_
51_36m
,
[source Clone_based_vega_transcript::homo_sapiens]
...
...
@@ -2585,7 +2596,7 @@ source = Illumina_V1::homo_sapiens
source
=
Illumina_V2::homo_sapiens
source
=
Interpro::MULTI
source
=
MIM::homo_sapiens
source
=
OTTT::
MULTI
source
=
OTTT::
homo_sapiens
source
=
RefSeq_dna::homo_sapiens
source
=
RefSeq_dna::homo_sapiens#01
source
=
RefSeq_peptide::homo_sapiens
...
...
@@ -2650,7 +2661,7 @@ source = IPI::mus_musculus
source
=
Illumina_V1::mus_musculus
source
=
Illumina_V2::mus_musculus
source
=
Interpro::MULTI
source
=
OTTT::
MULTI
source
=
OTTT::
mus_musculus
source
=
RefSeq_dna::mus_musculus
source
=
RefSeq_peptide::mus_musculus
source
=
UniGene::mus_musculus
...
...
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