drosophila needs seperate parser for uniport files as we only want to get the descriptions etc

misc-scripts/xref_mapping/xref_config.ini

@@ -1804,7 +1804,7 @@ parser          = UniProtParser
 release_uri     =
 
 [source Uniprot/SPTREMBL::MULTI]
-# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
+# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
 name            = Uniprot/SPTREMBL
 download        = Y
 order           = 20
@@ -1825,7 +1825,7 @@ parser          = UniProtParser
 release_uri     =
 
 [source Uniprot/SWISSPROT::MULTI]
-# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
+# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
 name            = Uniprot/SWISSPROT
 download        = Y
 order           = 20
@@ -1849,13 +1849,24 @@ release_uri     =
 # Used by drosophila_melanogaster
 name            = Uniprot/SWISSPROT
 download        = Y
-order           = 20
+order           = 200
 priority        = 1
 prio_descr      =
-parser          = UniProtParser
+parser          = UniProtParser_descriptions_only
 release_uri     =
 data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/integr8/uniprot/proteomes/17.D_melanogaster.dat.gz
 
+[source Uniprot/SPTREMBL::drosophila_melanogaster]
+# Used by drosophila_melanogaster
+name            = Uniprot/SPTREMBL
+download        = Y
+order           = 200
+priority        = 1
+prio_descr      =
+parser          = UniProtParser_descriptions_only
+release_uri     = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt
+data_uri        = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz
+
 [source Uniprot/Varsplic::MULTI]
 # Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
 name            = Uniprot/Varsplic
@@ -2515,10 +2526,9 @@ source          = Interpro::MULTI
 source          = RefSeq_dna::MULTI-invertebrate
 source          = RefSeq_peptide::MULTI-invertebrate
 source          = UniGene::drosophila_melanogaster
-source          = Uniprot/SPTREMBL::MULTI
-source          = Uniprot/SWISSPROT::MULTI
+source          = Uniprot/SPTREMBL::drosophila_melanogaster
 source          = Uniprot/SWISSPROT::drosophila_melanogaster
-source          = Uniprot/Varsplic::MULTI
+#source          = Uniprot/Varsplic::MULTI
 source          = flybase_gff::drosophila_melanogaster
 
 [species echinops_telfairi]