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ensembl-gh-mirror
ensembl
Commits
d643d889
Commit
d643d889
authored
13 years ago
by
Andreas Kusalananda Kähäri
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Add loop labels.
Do not die when finding an InnoDB table, go on to the next database instead.
parent
46747ea7
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1 changed file
misc-scripts/CopyDBoverServer.pl
+43
-31
43 additions, 31 deletions
misc-scripts/CopyDBoverServer.pl
with
43 additions
and
31 deletions
misc-scripts/CopyDBoverServer.pl
+
43
−
31
View file @
d643d889
...
...
@@ -441,6 +441,7 @@ if ($do_unlink_tmp_file) {
## directory. ##
##====================================================================##
TODO:
foreach
my
$spec
(
@todo
)
{
my
$source_server
=
$spec
->
{'
source_server
'};
my
$source_hostname
=
$spec
->
{'
source_hostname
'};
...
...
@@ -478,7 +479,7 @@ foreach my $spec (@todo) {
$spec
->
{'
status
'}
=
sprintf
(
"
FAILED: can not connect to source database '%s@%s:%d'.
",
$source_db
,
$source_server
,
$source_port
);
next
;
next
TODO
;
}
my
$target_dsn
=
sprintf
(
"
DBI:mysql:host=%s;port=%d
",
...
...
@@ -499,7 +500,7 @@ foreach my $spec (@todo) {
$target_server
,
$target_port
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
# Get source and target server data directories.
...
...
@@ -523,7 +524,7 @@ foreach my $spec (@todo) {
$source_server
,
$source_port
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
if
(
defined
(
$target_location
)
)
{
$target_dir
=
$target_location
}
...
...
@@ -539,7 +540,7 @@ foreach my $spec (@todo) {
$target_server
,
$target_port
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
my
$tmp_dir
;
...
...
@@ -576,7 +577,7 @@ foreach my $spec (@todo) {
$destination_dir
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
if
(
!
$opt_force
&&
-
d
$staging_dir
)
{
...
...
@@ -587,7 +588,7 @@ foreach my $spec (@todo) {
sprintf
(
"
FAILED: staging directory '%s' exists.
",
$staging_dir
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
if
(
!
mkdir
(
$staging_dir
)
)
{
...
...
@@ -600,7 +601,7 @@ foreach my $spec (@todo) {
$staging_dir
);
$source_dbh
->
disconnect
();
next
;
next
TODO
;
}
}
...
...
@@ -615,38 +616,47 @@ foreach my $spec (@todo) {
# Fancy magic from DBI manual.
$table_sth
->
bind_columns
(
\
(
@row
{
@
{
$table_sth
->
{'
NAME_lc
'}
}
}
)
);
TABLE:
while
(
$table_sth
->
fetch
()
)
{
my
$table
=
$row
{'
name
'};
my
$engine
=
$row
{'
engine
'};
if
(
defined
(
$opt_only_tables
)
&&
!
exists
(
$only_tables
{
$table
}
)
)
{
next
;
}
elsif
(
defined
(
$opt_skip_tables
)
&&
exists
(
$skip_tables
{
$table
}
)
)
{
next
;
next
TABLE
;
}
elsif
(
defined
(
$opt_skip_tables
)
&&
exists
(
$skip_tables
{
$table
}
)
)
{
next
TABLE
;
}
if
(
defined
(
$engine
)
)
{
if
(
$engine
eq
'
InnoDB
'
)
{
if
(
!
$opt_innodb
)
{
warn
(
sprintf
(
"
SKIPPING InnoDB table '%s.%s'
\n
",
$source_db
,
$table
)
);
next
;
}
else
{
die
(
sprintf
(
"
Found InnoDB table '%s.%s'
\n
"
.
"
Please convert table engine or specify --noinnodb
",
$source_db
,
$table
)
);
warn
(
sprintf
(
"
SKIPPING InnoDB table '%s.%s'
\n
",
$source_db
,
$table
)
);
next
TABLE
;
}
else
{
$spec
->
{'
status
'}
=
sprintf
(
"
FAILED: can not copy InnoDB tables.
"
.
"
Please convert '%s.%s' to MyISAM
"
.
"
or run with --noinnodb.
",
$source_db
,
$table
);
next
TODO
;
}
}
}
else
{
if
(
$opt_skip_views
)
{
}
else
{
if
(
$opt_skip_views
)
{
warn
(
sprintf
(
"
SKIPPING view '%s'
\n
",
$table
)
);
next
;
next
TABLE
;
}
else
{
push
(
@views
,
$table
);
push
(
@views
,
$table
);
}
}
...
...
@@ -766,7 +776,7 @@ foreach my $spec (@todo) {
$spec
->
{'
status
'}
=
sprintf
(
"
FAILED: copy failed (cleanup of '%s' may be needed).
",
$staging_dir
);
next
;
next
TODO
;
}
##------------------------------------------------------------------##
...
...
@@ -787,6 +797,7 @@ foreach my $spec (@todo) {
else
{
my
$ok
=
1
;
VIEW:
foreach
my
$current_view
(
@views
)
{
print
"
Processing
$current_view
\n
";
...
...
@@ -804,7 +815,7 @@ foreach my $spec (@todo) {
sprintf
(
q{Cannot tie file '%s' for VIEW repair. Error}
,
$view_frm_loc
)
);
$ok
=
0
;
next
;
next
VIEW
;
}
}
...
...
@@ -862,7 +873,7 @@ foreach my $spec (@todo) {
}
## end foreach my $index ( glob( catfile...))
}
## end foreach my $table (@tables)
if
(
$check_failed
)
{
next
}
if
(
$check_failed
)
{
next
TODO
}
}
## end else [ if ( !$opt_check ) ]
...
...
@@ -887,7 +898,7 @@ foreach my $spec (@todo) {
sprintf
(
"
FAILED: can not create destination directory '%s'
"
.
"
(cleanup of '%s' may be needed)
",
$destination_dir
,
$staging_dir
);
next
;
next
TODO
;
}
move
(
catfile
(
$staging_dir
,
'
db.opt
'
),
$destination_dir
);
...
...
@@ -898,6 +909,7 @@ foreach my $spec (@todo) {
printf
(
"
Moving %s...
\n
",
$table
);
FILE:
foreach
my
$file
(
@files
)
{
if
(
!
move
(
$file
,
$destination_dir
)
)
{
warn
(
sprintf
(
"
Failed to move database.
\n
"
...
...
@@ -905,10 +917,10 @@ foreach my $spec (@todo) {
$staging_dir
,
$destination_dir
)
);
$spec
->
{'
status
'}
=
sprintf
(
"
FAILED:
move
from staging directory
failed
"
.
"
(cleanup of '%s' and '%s' may be needed)
",
$staging_dir
,
$destination_dir
);
next
;
sprintf
(
"
FAILED:
can not move '%s'
from staging directory
"
.
"
(cleanup of '%s' and '%s' may be needed)
",
$file
,
$staging_dir
,
$destination_dir
);
next
FILE
;
}
}
}
...
...
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