1 Ab_initio_RepeatMask Repeats Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org/">RepeatMasker</a> using ab initio repeat profiles specific to the species.
1 AlignAffy Probes (Affymetrix) Microarray probes from Affymetrix (and other manufacturers) are aligned to the genome by Ensembl, if probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/about/docs/microarray_probe_set_mapping.html">here</a>.
1 AffyAlign Probes (Affymetrix) Microarray probes from Affymetrix (and other manufacturers) are aligned to the genome by Ensembl, if probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/about/docs/microarray_probe_set_mapping.html">here</a>.
1 AlignAffyProbes Probes (Affymetrix) Microarray probes from Affymetrix (and other manufacturers) are aligned to the genome by Ensembl, if probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/about/docs/microarray_probe_set_mapping.html">here</a>.
1 AlignAffy Probes (Affymetrix) Microarray probes from Affymetrix are aligned to the genome by Ensembl, if probe sequences are provided. These genomic mapping are then used as the input for the transcript mapping process outlined <a href="/htdocs/info/docs/microarray_probe_set_mapping.html">here</a>.
1 probe2Transcript Microarray Probe Sets Ensembl annotates microarray probe sets on the genome sequences if manufacturers disclosed individual probe set sequences for a particular micro array. The Ensembl 'ContigView' displays probes that match to the current assembly. If not displayed by default, microarray probe set tracks are available from the 'Features' menu in the yellow menu bar of the 'Detailed View' panel. Pointing at a particular probe in a probe set track displays a pop-up window which links to the probe set details on the FeatureView page. Here a karyotype image is annotated with probe locations accompanied by a table listing the specific details of each probe mapping for a given probe set. Associated Gene information is also reported, which is derived from the transcript mapping process. The mapping process is a two step procedure out-lined in the <a href='/htdocs/info/docs/microarray_probe_set_mapping.html'>Microarray Probe Set Mapping<\a> document.
1 Arma_ab_initio_RepeatMask Repeats (Armadillo) Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org/">RepeatMasker</a> using ab initio repeat profiles specific to Dasypus novemcinctus.
1 Arma_sup_RepeatMask Repeats (Armadillo +) Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org/">RepeatMasker</a> using a supplemental repeat database specific to Dasypus novemcinctus.
1 BACends BAC ends Bacterial Artificial Chromosome (end sequences) of library clones that were used in the sequencing project are aligned to the genome using <a rel="external" href="http://www.sanger.ac.uk/Software/analysis/SSAHA2/">SSAHA2</a>.
