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ensembl-gh-mirror
ensembl
Commits
dc0b3d3e
Commit
dc0b3d3e
authored
12 years ago
by
Monika Komorowska
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revert back to selecting all source statuses and all object linkage types to populate display xrefs
parent
58abcf66
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1 changed file
misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
+1
-5
1 addition, 5 deletions
misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
with
1 addition
and
5 deletions
misc-scripts/xref_mapping/XrefMapper/DisplayXrefs.pm
+
1
−
5
View file @
dc0b3d3e
...
...
@@ -337,7 +337,7 @@ from ( source s
left
join
gene_transcript_translation
gtt_translation
on
(
gtt_translation
.
translation_id
=
ox
.
ensembl_id
)
where
ox
.
ox_status
=
'
DUMP_OUT
'
AND
s.status like
"
KNOWN%
"
AND
s.status like
'
KNOWN%
'
AND ox.linkage_type <> 'DEPENDENT'
ORDER BY gene_id DESC, transcript_id DESC
DXS
...
...
@@ -663,8 +663,6 @@ from ( display_xref_prioritys p
left
join
gene_transcript_translation
gtt_translation
on
(
gtt_translation
.
translation_id
=
ox
.
ensembl_id
)
where
ox
.
ox_status
=
'
DUMP_OUT
'
AND
s.status like "KNOWN%"
AND ox.linkage_type <> 'DEPENDENT'
order
by
gene_id
DESC
,
p
.
priority
DESC
,
(
ix
.
target_identity
+
ix
.
query_identity
)
DESC
,
ox
.
unused_priority
DESC
DXS
...
...
@@ -911,8 +909,6 @@ from ( gene_desc_prioritys p
left
join
gene_transcript_translation
gtt_translation
on
(
gtt_translation
.
translation_id
=
ox
.
ensembl_id
)
where
ox
.
ox_status
=
'
DUMP_OUT
'
AND
s.status like "KNOWN%"
AND ox.linkage_type <> 'DEPENDENT'
order
by
gene_id
desc
,
p
.
priority
desc
,
(
ix
.
target_identity
+
ix
.
query_identity
)
desc
...
...
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