Commit dd1b3582 authored by Kieron Taylor's avatar Kieron Taylor 😠
Browse files

Patch up compara and variation test DBs that seem to have been overlooked by the patcher

parent ad9d4f93
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:26 2017
-- Created on Wed May 31 17:43:50 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:31 2017
-- Created on Wed May 31 17:43:54 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:35 2017
-- Created on Wed May 31 17:43:59 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:40 2017
-- Created on Wed May 31 17:44:04 2017
--
BEGIN TRANSACTION;
......
1 \N schema_type variation
2 \N schema_version 88
2 \N schema_version 89
3 \N patch patch_84_85_a.sql|schema version
4 \N patch patch_84_85_b.sql|create sample_synonym
5 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
......@@ -16,3 +16,5 @@
16 \N patch patch_86_87_a.sql|schema version
17 \N patch patch_87_88_a.sql|schema version
18 \N patch patch_87_88_b.sql|seq_region_name_255
19 \N patch patch_88_89_a.sql|schema version
20 \N patch patch_88_89_b.sql|Drop strain_gtype_poly table
......@@ -168,7 +168,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=19 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=21 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
......@@ -404,12 +404,6 @@ CREATE TABLE `source` (
PRIMARY KEY (`source_id`)
) ENGINE=MyISAM AUTO_INCREMENT=2 DEFAULT CHARSET=latin1;
CREATE TABLE `strain_gtype_poly` (
`variation_id` int(10) unsigned NOT NULL,
`sample_name` varchar(100) DEFAULT NULL,
PRIMARY KEY (`variation_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
CREATE TABLE `structural_variation` (
`structural_variation_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`variation_name` varchar(255) DEFAULT NULL,
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:44 2017
-- Created on Wed May 31 17:44:08 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:48 2017
-- Created on Wed May 31 17:44:12 2017
--
BEGIN TRANSACTION;
......@@ -360,7 +360,7 @@ CREATE TABLE genomic_align_block (
--
CREATE TABLE genomic_align_tree (
node_id INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
parent_id bigint NOT NULL DEFAULT 0,
parent_id bigint,
root_id bigint NOT NULL DEFAULT 0,
left_index integer NOT NULL DEFAULT 0,
right_index integer NOT NULL DEFAULT 0,
......
23 \N schema_version 88
33 \N schema_version 89
2 \N schema_type compara
3 \N patch patch_84_85_a.sql|schema_version
4 \N patch patch_84_85_b.sql|gene_tree_root_attr
......@@ -27,3 +27,5 @@
30 \N patch patch_87_88_g.sql|genome_db.strain_name
31 \N patch patch_87_88_h.sql|exon_boundaries
32 \N patch patch_87_88_i.sql|genome_db.display_name
34 \N patch patch_88_89_a.sql|schema_version
35 \N patch patch_88_89_b.sql|genomic_align_tree_parent_id_null
......@@ -330,7 +330,7 @@ CREATE TABLE `genomic_align_block` (
CREATE TABLE `genomic_align_tree` (
`node_id` bigint(20) unsigned NOT NULL AUTO_INCREMENT,
`parent_id` bigint(20) unsigned NOT NULL DEFAULT '0',
`parent_id` bigint(20) unsigned DEFAULT NULL,
`root_id` bigint(20) unsigned NOT NULL DEFAULT '0',
`left_index` int(10) NOT NULL DEFAULT '0',
`right_index` int(10) NOT NULL DEFAULT '0',
......@@ -434,7 +434,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)),
KEY `species_value_idx` (`species_id`,`meta_value`(255))
) ENGINE=MyISAM AUTO_INCREMENT=33 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=36 DEFAULT CHARSET=latin1;
CREATE TABLE `method_link` (
`method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:52 2017
-- Created on Wed May 31 17:44:16 2017
--
BEGIN TRANSACTION;
......
1 \N schema_type variation
2 \N schema_version 88
2 \N schema_version 89
6 1 species.production_name mus_musculus
15 1 web_config sv_study#Keane 2011 (DGVa study estd118)#Keane 2011#estd118
14 1 web_config set#All failed variants#All failed variants#variation_set_fail_all#failed
......@@ -43,3 +43,5 @@
49 \N patch patch_86_87_a.sql|schema version
50 \N patch patch_87_88_a.sql|schema version
51 \N patch patch_87_88_b.sql|seq_region_name_255
52 \N patch patch_88_89_a.sql|schema version
53 \N patch patch_88_89_b.sql|Drop strain_gtype_poly table
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:56 2017
-- Created on Wed May 31 17:44:20 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:52:58 2017
-- Created on Wed May 31 17:44:22 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:53:03 2017
-- Created on Wed May 31 17:44:27 2017
--
BEGIN TRANSACTION;
......
--
-- Created by SQL::Translator::Producer::SQLite
-- Created on Wed May 31 14:53:07 2017
-- Created on Wed May 31 17:44:31 2017
--
BEGIN TRANSACTION;
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment