Commit de115093 authored by Dan Staines's avatar Dan Staines
Browse files

added external_dbs used by the Ensembl Genomes project

parent bad8b790
......@@ -206,6 +206,86 @@
12601 Tgut_symbol 1 KNOWNXREF 0 0 100 Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK PRIMARY_DB_SYNONYM \N \N
12610 Fantom 1 XREF 0 1 50 Fantom MISC \N \N
12700 goslim_goa 1 XREF 1 0 5 GOSlim GOA MISC \N \N
# Ensembl Genomes external dbs
20005 UniParc 1 KNOWNXREF 1 \N \N UniParc PRIMARY_DB_SYNONYM \N \N \N
20008 BRENDA 1 KNOWNXREF 1 \N \N BRENDA PRIMARY_DB_SYNONYM \N \N \N
20009 BioCyc 1 KNOWNXREF 1 \N \N BioCyc PRIMARY_DB_SYNONYM \N \N \N
20010 BuruList 1 KNOWNXREF 1 \N \N BuruList PRIMARY_DB_SYNONYM \N \N \N
20013 EchoBASE 1 KNOWNXREF 1 \N \N EchoBASE PRIMARY_DB_SYNONYM \N \N \N
20014 EcoGene 1 KNOWNXREF 1 \N \N EcoGene PRIMARY_DB_SYNONYM \N \N \N
20017 GeneDB_Spombe 1 KNOWNXREF 1 \N \N GeneDB_Spombe PRIMARY_DB_SYNONYM \N \N \N
20025 Leproma 1 KNOWNXREF 1 \N \N Leproma PRIMARY_DB_SYNONYM \N \N \N
20031 2DBase-Ecoli 1 KNOWNXREF 1 \N \N 2DBase-Ecoli PRIMARY_DB_SYNONYM \N \N \N
20038 SagaList 1 KNOWNXREF 1 \N \N SagaList PRIMARY_DB_SYNONYM \N \N \N
20040 SubtiList 1 KNOWNXREF 1 \N \N SubtiList PRIMARY_DB_SYNONYM \N \N \N
20042 TIGR 1 KNOWNXREF 1 \N \N TIGR PRIMARY_DB_SYNONYM \N \N \N
20043 TubercuList 1 KNOWNXREF 1 \N \N TubercuList PRIMARY_DB_SYNONYM \N \N \N
20046 ArrayExpress 1 KNOWNXREF 1 \N \N ArrayExpress PRIMARY_DB_SYNONYM \N \N \N
20050 GermOnline 1 KNOWNXREF 1 \N \N GermOnline PRIMARY_DB_SYNONYM \N \N \N
20059 DIP 1 KNOWNXREF 1 \N \N DIP PRIMARY_DB_SYNONYM \N \N \N
20061 DisProt 1 KNOWNXREF 1 \N \N DisProt PRIMARY_DB_SYNONYM \N \N \N
20062 DrugBank 1 KNOWNXREF 1 \N \N DrugBank PRIMARY_DB_SYNONYM \N \N \N
20065 GlycoSuiteDB 1 KNOWNXREF 1 \N \N GlycoSuiteDB PRIMARY_DB_SYNONYM \N \N \N
20066 HAMAP 1 KNOWNXREF 1 \N \N HAMAP PRIMARY_DB_SYNONYM \N \N \N
20067 HOGENOM 1 KNOWNXREF 1 \N \N HOGENOM PRIMARY_DB_SYNONYM \N \N \N
20071 HSSP 1 KNOWNXREF 1 \N \N HSSP PRIMARY_DB_SYNONYM \N \N \N
20072 IntAct 1 KNOWNXREF 1 \N \N IntAct PRIMARY_DB_SYNONYM \N \N \N
20074 KEGG 1 KNOWNXREF 1 \N \N KEGG PRIMARY_DB_SYNONYM \N \N \N
20078 PDBsum 1 KNOWNXREF 1 \N \N PDBsum PRIMARY_DB_SYNONYM \N \N \N
20082 PeroxiBase 1 KNOWNXREF 1 \N \N PeroxiBase PRIMARY_DB_SYNONYM \N \N \N
20083 PhosSite 1 KNOWNXREF 1 \N \N PhosSite PRIMARY_DB_SYNONYM \N \N \N
20084 PptaseDB 1 KNOWNXREF 1 \N \N PptaseDB PRIMARY_DB_SYNONYM \N \N \N
20085 REBASE 1 KNOWNXREF 1 \N \N REBASE PRIMARY_DB_SYNONYM \N \N \N
20088 Reactome 1 KNOWNXREF 1 \N \N Reactome PRIMARY_DB_SYNONYM \N \N \N
20090 SWISS-2DPAGE 1 KNOWNXREF 1 \N \N SWISS-2DPAGE PRIMARY_DB_SYNONYM \N \N \N
20097 RegulonDb-Transcript 1 KNOWNXREF 1 \N \N RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20099 RegulonDb-Gene 1 KNOWNXREF 1 \N \N RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20101 IntEnz 1 KNOWNXREF 1 \N \N Enzyme Commission PRIMARY_DB_SYNONYM \N \N \N
20102 ArrayExpressExperiment 1 KNOWNXREF 1 \N \N ArrayExpressExperiment PRIMARY_DB_SYNONYM \N \N \N
20200 EMBLBANK_GENE 1 KNOWNXREF \N \N \N EMBL-Bank PRIMARY_DB_SYNONYM \N \N \N
20201 GeneDB_SPombe_transcript 1 KNOWNXREF \N \N \N GeneDB_SPombe PRIMARY_DB_SYNONYM \N \N \N
20202 EBACTERIA_GENE 1 KNOWNXREF \N \N \N e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
20203 EBACTERIA_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
20205 EPROTIST_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Protists PRIMARY_DB_SYNONYM \N \N \N
20207 EFUNGI_GENE 1 KNOWNXREF \N \N \N e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20208 EFUNGI_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20301 RNAMMER 1 KNOWNXREF 1 \N \N RNAmmer MISC \N \N \N
20302 TRNASCAN-SE 1 KNOWNXREF 1 \N \N tRNAScan-SE MISC \N \N \N
# Ensembl Plants/Gramene external dbs
50000 BGI_EST_Cluster 1 XREF 1 0 0 EST Cluster (BGI Indica) MISC \N \N
50005 EC_NUMBER 1 XREF 1 0 0 Enzyme EC Number MISC \N \N
50010 FSTs 1 XREF 1 0 0 Flanking Sequence Tag (FST) MISC \N \N
50015 gene_name 1 KNOWNXREF 1 0 0 Gene Name MISC \N \N
50020 Gramene_Pathway 1 XREF 1 0 0 Gramene Pathway MISC \N \N
50030 Gramene_GenesDB 1 KNOWNXREF 1 0 100 Gramene Curated Gene MISC \N \N
50035 Gramene_MarkersDB 1 XREF 1 0 0 Gramene MISC \N \N
50040 Gramene_MarkersDB_mRNA 1 XREF 1 0 0 GenBank mRNA (Gramene) MISC \N \N
50050 Gramene_MarkersDB_EST 1 XREF 1 0 0 GenBank EST (Gramene) MISC \N \N
50060 IRGSP_Gene 1 XREF 1 0 0 IRGSP/RAP Gene MISC \N \N
50065 KOME 1 KNOWNXREF 1 0 0 Full Length cDNA (KOME) MISC \N \N
50070 miRNA_Accession 1 XREF 1 0 0 miRNA miRBase accession MISC \N \N
50080 miRNA_Registry 1 XREF 1 0 1 miRNA Registry MISC \N \N
50090 NASC_GENE_ID 1 XREF 1 0 1 NASC Gene ID MISC \N \N
50100 NASC_TRANSCRIPT_ID 1 XREF 1 0 1 NASC Transcript ID MISC \N \N
50110 PlantGDB_PUT 1 XREF 1 0 1 PlantGDB Transcript MISC \N \N
50120 RAP_Gene 1 XREF 1 0 0 IRGSP/RAP Gene MISC \N \N
50130 siRNA_Sunkar 1 XREF 1 0 0 siRNA ID from Sunkar et. al. 2005 NAR 33(14):4443-54 MISC \N \N
50140 TIGR_LOCUS 1 XREF 0 1 1 MSU/TIGR Locus MISC \N \N
50150 TIGR_LOCUS_MODEL 1 XREF 0 1 0 MSU/TIGR Locus (Model) MISC \N \N
50160 TAIR_LOCUS 1 XREF 1 0 8 TAIR Locus MISC \N \N
50170 TAIR_LOCUS_MODEL 1 XREF 1 0 8 TAIR Locus (Model) MISC \N \N
50180 TIGR_GeneIndex 1 XREF 1 0 0 Gene Index MISC \N \N
50185 TO 1 XREF 1 0 0 Plant Trait Ontology MISC \N \N
50190 PO 1 XREF 1 0 0 Plant Structure Ontology MISC \N \N
50195 PO_to_gene 1 XREF 1 0 0 Plant Structure Ontology MISC \N \N
50196 GO_to_gene 1 XREF 1 0 0 Gene Ontology MISC \N \N
50200 GRO 1 XREF 1 0 0 Plant Growth Stage MISC \N \N
# Oligo Arrays
50510 AFFY_RICE 1 XREF 1 0 1 Affymx GeneChip Rice ARRAY \N \N
50520 AFFY_ATH1 1 XREF 1 0 1 Affymx GeneChip ATH1 ARRAY \N \N
50530 AFFY_Vitis_Vinifera 1 XREF 1 0 1 Affymx GeneChip Vitis vinifera ARRAY \N \N
50540 AFFY_Poplar 1 XREF 1 0 1 Affymx GeneChip Poplar ARRAY \N \N
#
#
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