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Commit e0884e58 authored by Monika Komorowska's avatar Monika Komorowska
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doc on creating the stable_id database

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The stable_id database is used by the Registry method get_species_and_object_type().
EnsEMBL REST API heavily relies on this method.
The database can be created on one of the staging servers once all the release databases, which contain
stable_ids to be copied into the stable_id database, are ready.
Currently the following stable ids are copied:
core Exon
Gene
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Operon
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compara GeneTree
Family
Command to create the stable_id database on ens-staging1 and copy stable ids from databases on ens-staging1 and 2:
bsub -q normal -M 1500000 -R'select[mem>1500] rusage[mem=1500]' -o ./stable_ids_68.out -e ./stable_ids_68.err perl ensembl/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl -lhost ens-staging1 -luser ensadmin -lpass xxx -create -host ens-staging1 -host ens-staging2 -user ensro
For release 68 the job consumed 1Gb of memory and took 818.61 sec to run.
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